Mercurial > repos > ebi-gxa > scanpy_read_10x

comparison scanpy-read-10x.xml @ 26:078aa23c9374 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:43:19 +0000
parents af6ecb5adcc1
children
comparison
equal deleted inserted replaced
25:af6ecb5adcc1 26:078aa23c9374
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>into hdf5 object handled by scanpy</description> 3 <description>into hdf5 object handled by scanpy</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
45 <param name="matrix" value="matrix.mtx"/> 45 <param name="matrix" value="matrix.mtx"/>
46 <param name="genes" value="genes.tsv"/> 46 <param name="genes" value="genes.tsv"/>
47 <param name="barcodes" value="barcodes.tsv"/> 47 <param name="barcodes" value="barcodes.tsv"/>
48 <!-- <param name="cell_meta" value=""/> --> 48 <!-- <param name="cell_meta" value=""/> -->
49 <param name="output_format" value="anndata"/> 49 <param name="output_format" value="anndata"/>
50 <output name="output_h5ad" file="read_10x.h5" ftype="h5" compare="sim_size"/> 50 <output name="output_h5ad" ftype="h5">
51 <assert_contents>
52 <has_h5_keys keys="var/gene_symbols"/>
53 </assert_contents>
54 </output>
51 </test> 55 </test>
52 </tests> 56 </tests>
53 57
54 <help><![CDATA[ 58 <help><![CDATA[
55 ================================================================= 59 =================================================================