Mercurial > repos > ebi-gxa > scanpy_read_10x
diff scanpy-read-10x.xml @ 5:f180f7230cdb draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author | ebi-gxa |
---|---|
date | Mon, 25 Nov 2019 14:41:17 -0500 |
parents | 3faf577f3e40 |
children | 5fa923796ed3 |
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--- a/scanpy-read-10x.xml Wed Nov 20 05:18:16 2019 -0500 +++ b/scanpy-read-10x.xml Mon Nov 25 14:41:17 2019 -0500 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy0"> +<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy6"> <description>into hdf5 object handled by scanpy</description> <macros> <import>scanpy_macros2.xml</import> @@ -30,14 +30,14 @@ <param name="gene_meta" type="data" format="tsv,tabular" label="Gene metadata table" optional="true" help="Requires a header row and index column that matches the gene table"/> <expand macro="output_object_params"/> - <param name="var_names" type="select" label="Attribute used as annotation index"> + <param name="var_names" type="select" label="Attribute used as annotation index" help="If Gene ID is selected the index will point to the gene identifiers (first columns expected) and the gene symbols will be left in a field called 'gene_symbols'."> <option value="gene_ids" selected="true">Gene ID</option> <option value="gene_symbols">Gene symbol</option> </param> </inputs> <outputs> - <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: ${output_format}"/> + <expand macro="output_data_obj" description="${output_format}"/> </outputs> <tests>