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comparison scanpy-regress-variable.xml @ 5:b174cb4cb89e draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:36:01 -0500
parents 203fac3b1ba3
children 5d112debfa2e
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4:2131ec9d52e2 5:b174cb4cb89e
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy1"> 2 <tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy6">
3 <description>variables that might introduce batch effect</description> 3 <description>variables that might introduce batch effect</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
27 </sanitizer> 27 </sanitizer>
28 </param> 28 </param>
29 </inputs> 29 </inputs>
30 30
31 <outputs> 31 <outputs>
32 <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: Scaled data"/> 32 <expand macro="output_data_obj" description="Regressed out ${variable_keys}"/>
33 </outputs> 33 </outputs>
34 34
35 <tests> 35 <tests>
36 <test> 36 <test>
37 <param name="input_obj_file" value="find_variable_genes.h5"/> 37 <param name="input_obj_file" value="find_variable_genes.h5"/>