Mercurial > repos > ebi-gxa > scanpy_regress_variable

comparison scanpy-regress-variable.xml @ 12:e277d77dc6da draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty"
author ebi-gxa
date Mon, 07 Sep 2020 13:04:51 +0000
parents 99c7380fae41
children 8205e95227e4
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11:9e92447122a6 12:e277d77dc6da
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@"> 2 <tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>variables that might introduce batch effect</description> 3 <description>variables that might introduce batch effect</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
36 <test> 36 <test>
37 <param name="input_obj_file" value="find_variable_genes.h5"/> 37 <param name="input_obj_file" value="find_variable_genes.h5"/>
38 <param name="input_format" value="anndata"/> 38 <param name="input_format" value="anndata"/>
39 <param name="output_format" value="anndata"/> 39 <param name="output_format" value="anndata"/>
40 <param name="variable_keys" value="n_counts"/> 40 <param name="variable_keys" value="n_counts"/>
41 <output name="output_h5" file="scale_data.h5" ftype="h5" compare="sim_size"/> 41 <output name="output_h5" file="regress.h5" ftype="h5" compare="sim_size"/>
42 </test> 42 </test>
43 </tests> 43 </tests>
44 44
45 <help><![CDATA[ 45 <help><![CDATA[
46 .. class:: infomark 46 .. class:: infomark