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comparison scanpy-regress-variable.xml @ 27:0bab2ae44e7a draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:03 +0000
parents bd65279c7ddc
children
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26:bd65279c7ddc 27:0bab2ae44e7a
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>variables that might introduce batch effect</description> 3 <description>variables that might introduce batch effect</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
37 <test> 37 <test>
38 <param name="input_obj_file" value="find_variable_genes.h5"/> 38 <param name="input_obj_file" value="find_variable_genes.h5"/>
39 <param name="input_format" value="anndata"/> 39 <param name="input_format" value="anndata"/>
40 <param name="output_format" value="anndata"/> 40 <param name="output_format" value="anndata"/>
41 <param name="variable_keys" value="n_counts"/> 41 <param name="variable_keys" value="n_counts"/>
42 <output name="output_h5" file="regress.h5" ftype="h5" compare="sim_size"/> 42 <output name="output_h5" ftype="h5">
43 <assert_contents>
44 <has_h5_keys keys="obs/n_genes_by_counts"/>
45 </assert_contents>
46 </output>
43 </test> 47 </test>
44 </tests> 48 </tests>
45 49
46 <help><![CDATA[ 50 <help><![CDATA[
47 .. class:: infomark 51 .. class:: infomark