Mercurial > repos > ebi-gxa > scanpy_run_diffmap

diff scanpy-run-diffmap.xml @ 24:e2ca1846080f draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 6c9d530aa653101e9e21804393ec11f38cddf027-dirty
author ebi-gxa
date Thu, 16 Feb 2023 13:29:55 +0000
parents 26e1a99e3c0f
children afec1d52b87d
line wrap: on
line diff
--- a/scanpy-run-diffmap.xml	Thu Oct 28 10:00:44 2021 +0000
+++ b/scanpy-run-diffmap.xml	Thu Feb 16 13:29:55 2023 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_run_diffmap" name="Scanpy DiffusionMap" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+<tool id="scanpy_run_diffmap" name="Scanpy DiffusionMap" version="@TOOL_VERSION@+galaxy9" profile="@PROFILE@">
   <description>calculate diffusion components</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -47,9 +47,6 @@
       <param name="input_obj_file" value="find_cluster.h5"/>
       <param name="input_format" value="anndata"/>
       <param name="output_format" value="anndata"/>
-      <param name="n_dcs" value="10"/>
-      <param name="root_attr" value="louvain"/>
-      <param name="root_value" value="1"/>
       <param name="use_graph" value="neighbors"/>
       <output name="output_h5" file="diffmap.h5" ftype="h5" compare="sim_size"/>
     </test>