Mercurial > repos > ebi-gxa > scanpy_run_dpt
comparison scanpy-run-dpt.xml @ 10:0e264c40fd06 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c98a1caf2a3eed8b1571dae2bf7a794adecdf406"
| author | ebi-gxa |
|---|---|
| date | Wed, 08 Apr 2020 05:42:03 -0400 |
| parents | eb764ec05bb9 |
| children | 820493156c4a |
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| 9:8a6860957c84 | 10:0e264c40fd06 |
|---|---|
| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_run_dpt" name="Scanpy DPT" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@"> | 2 <tool id="scanpy_run_dpt" name="Scanpy DPT" version="@TOOL_VERSION@+galaxy11" profile="@PROFILE@"> |
| 3 <description>diffusion pseudotime inference</description> | 3 <description>diffusion pseudotime inference</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 40 <param name="root_value" argument="--root attr {value}" type="text" | 40 <param name="root_value" argument="--root attr {value}" type="text" |
| 41 label="Name of the clustering that defines the root cell type"/> | 41 label="Name of the clustering that defines the root cell type"/> |
| 42 <param name="use_graph" argument="--use-graph" value="neighbors" type="text" | 42 <param name="use_graph" argument="--use-graph" value="neighbors" type="text" |
| 43 label="Name of the slot that holds the KNN graph"/> | 43 label="Name of the slot that holds the KNN graph"/> |
| 44 <param name="key_added" argument="--key-added" type="text" optional="true" | 44 <param name="key_added" argument="--key-added" type="text" optional="true" |
| 45 label="Additional suffix to the name of the slot to save the calculated trajectory"/> | 45 label="Additional suffix to the name of the slot to save the calculated pseudo-time"/> |
| 46 </inputs> | 46 </inputs> |
| 47 | 47 |
| 48 <outputs> | 48 <outputs> |
| 49 <expand macro="output_data_obj" description="Diffussion pseudotime inference"/> | 49 <expand macro="output_data_obj" description="Diffussion pseudotime inference"/> |
| 50 </outputs> | 50 </outputs> |