Mercurial > repos > ebi-gxa > scanpy_run_dpt

comparison scanpy-run-dpt.xml @ 26:03921aa8b29c draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:43:43 +0000
parents 2f569aa8c920
children
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25:2f569aa8c920 26:03921aa8b29c
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_run_dpt" name="Scanpy DPT" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_run_dpt" name="Scanpy DPT" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>diffusion pseudotime inference</description> 3 <description>diffusion pseudotime inference</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
60 <param name="output_format" value="anndata"/> 60 <param name="output_format" value="anndata"/>
61 <param name="n_dcs" value="10"/> 61 <param name="n_dcs" value="10"/>
62 <param name="root_attr" value="louvain"/> 62 <param name="root_attr" value="louvain"/>
63 <param name="root_value" value="1"/> 63 <param name="root_value" value="1"/>
64 <param name="use_graph" value="neighbors"/> 64 <param name="use_graph" value="neighbors"/>
65 <output name="output_h5" file="dpt.h5" ftype="h5" compare="sim_size"/> 65 <output name="output_h5" ftype="h5">
66 <assert_contents>
67 <has_h5_keys keys="obs/dpt_pseudotime"/>
68 </assert_contents>
69 </output>
66 </test> 70 </test>
67 </tests> 71 </tests>
68 72
69 <help><![CDATA[ 73 <help><![CDATA[
70 ================================================ 74 ================================================