Mercurial > repos > ebi-gxa > scanpy_run_fdg
comparison scanpy-run-fdg.xml @ 26:be019b069e31 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
| author | ebi-gxa |
|---|---|
| date | Tue, 27 Feb 2024 16:43:40 +0000 |
| parents | cef0ddd01875 |
| children |
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| 25:cef0ddd01875 | 26:be019b069e31 |
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| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> | 2 <tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
| 3 <description>visualise cell clusters using force-directed graph</description> | 3 <description>visualise cell clusters using force-directed graph</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 77 <param name="input_format" value="anndata"/> | 77 <param name="input_format" value="anndata"/> |
| 78 <param name="output_format" value="anndata"/> | 78 <param name="output_format" value="anndata"/> |
| 79 <param name="default" value="false"/> | 79 <param name="default" value="false"/> |
| 80 <param name="embeddings" value="true"/> | 80 <param name="embeddings" value="true"/> |
| 81 <param name="random_seed" value="0"/> | 81 <param name="random_seed" value="0"/> |
| 82 <output name="output_h5" file="run_fdg.h5" ftype="h5" compare="sim_size"/> | 82 <output name="output_h5" ftype="h5"> |
| 83 <output name="output_embed" file="run_fdg.embeddings.tsv" ftype="tabular" compare="sim_size"> | 83 <assert_contents> |
| 84 <has_h5_keys keys="obsm/X_draw_graph_fr"/> | |
| 85 </assert_contents> | |
| 86 </output> | |
| 87 <output name="output_embed" file="run_fdg.embeddings.tsv" ftype="tabular" compare="sim_size" delta_frac="0.1"> | |
| 84 <assert_contents> | 88 <assert_contents> |
| 85 <has_n_columns n="3"/> | 89 <has_n_columns n="3"/> |
| 86 </assert_contents> | 90 </assert_contents> |
| 87 </output> | 91 </output> |
| 88 </test> | 92 </test> |