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comparison scanpy-run-paga.xml @ 25:b2768cae00a1 draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:59 +0000
parents 6b7a5d15a89b
children
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24:6b7a5d15a89b 25:b2768cae00a1
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_run_paga" name="Scanpy PAGA" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_run_paga" name="Scanpy PAGA" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>trajectory inference</description> 3 <description>trajectory inference</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
41 <param name="input_obj_file" value="find_cluster.h5"/> 41 <param name="input_obj_file" value="find_cluster.h5"/>
42 <param name="input_format" value="anndata"/> 42 <param name="input_format" value="anndata"/>
43 <param name="output_format" value="anndata"/> 43 <param name="output_format" value="anndata"/>
44 <param name="groups" value="louvain"/> 44 <param name="groups" value="louvain"/>
45 <param name="neighbors_key" value="neighbors"/> 45 <param name="neighbors_key" value="neighbors"/>
46 <output name="output_h5" file="paga.h5" ftype="h5" compare="sim_size"/> 46 <output name="output_h5" ftype="h5">
47 <assert_contents>
48 <has_h5_keys keys="uns/paga"/>
49 </assert_contents>
50 </output>
47 </test> 51 </test>
48 </tests> 52 </tests>
49 53
50 <help><![CDATA[ 54 <help><![CDATA[
51 =================================================================== 55 ===================================================================