Mercurial > repos > ebi-gxa > scanpy_run_paga
diff scanpy-run-paga.xml @ 25:b2768cae00a1 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author | ebi-gxa |
---|---|
date | Tue, 27 Feb 2024 16:42:59 +0000 |
parents | 6b7a5d15a89b |
children |
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--- a/scanpy-run-paga.xml Fri Oct 13 14:08:54 2023 +0000 +++ b/scanpy-run-paga.xml Tue Feb 27 16:42:59 2024 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_run_paga" name="Scanpy PAGA" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> +<tool id="scanpy_run_paga" name="Scanpy PAGA" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> <description>trajectory inference</description> <macros> <import>scanpy_macros2.xml</import> @@ -43,7 +43,11 @@ <param name="output_format" value="anndata"/> <param name="groups" value="louvain"/> <param name="neighbors_key" value="neighbors"/> - <output name="output_h5" file="paga.h5" ftype="h5" compare="sim_size"/> + <output name="output_h5" ftype="h5"> + <assert_contents> + <has_h5_keys keys="uns/paga"/> + </assert_contents> + </output> </test> </tests>