Mercurial > repos > ebi-gxa > scanpy_run_pca
comparison scanpy_macros2.xml @ 3:8b4dae3748d3 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit d13a0a5fceabe51e1a6fe763767b963623aa295a
| author | ebi-gxa |
|---|---|
| date | Mon, 28 Oct 2019 05:23:07 -0400 |
| parents | fe900f147809 |
| children | c990e40fbd46 |
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| 2:fe900f147809 | 3:8b4dae3748d3 |
|---|---|
| 77 <param name="fig_frame" type="boolean" truevalue="--frameon" falsevalue="--frameoff" checked="false" | 77 <param name="fig_frame" type="boolean" truevalue="--frameon" falsevalue="--frameoff" checked="false" |
| 78 label="Show plot frame"/> | 78 label="Show plot frame"/> |
| 79 </xml> | 79 </xml> |
| 80 | 80 |
| 81 <xml name="export_mtx_params"> | 81 <xml name="export_mtx_params"> |
| 82 <param name="export_mtx" argument="--export-mtx" type="boolean" truevalue="--export-mtx ./" falsevalue="" checked="false" label="Save normalised data to 10x mtx format" help="If enabled, it will generate in addition to the main output in Loom or AnnData an export in 10x format of the normalised data."/> | 82 <param name="export_mtx" argument="--export-mtx" type="boolean" truevalue="--export-mtx ./" falsevalue="" checked="false" label="Save to 10x mtx format" help="If enabled, it will generate in addition to the main output in Loom or AnnData an export in 10x format."/> |
| 83 </xml> | 83 </xml> |
| 84 | 84 |
| 85 <xml name="export_mtx_outputs"> | 85 <xml name="export_mtx_outputs"> |
| 86 <data name="matrix_10x" format="txt" from_work_dir="matrix.mtx" label="${tool.name} on ${on_string}: 10x matrix"> | 86 <data name="matrix_10x" format="txt" from_work_dir="matrix.mtx" label="${tool.name} on ${on_string}: 10x matrix"> |
| 87 <filter>export_mtx</filter> | 87 <filter>export_mtx</filter> |