Mercurial > repos > ebi-gxa > scanpy_run_pca

comparison scanpy-run-pca.xml @ 26:4428dba93375 draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:43:36 +0000
parents f0eecf608220
children
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25:f0eecf608220 26:4428dba93375
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>for dimensionality reduction</description> 3 <description>for dimensionality reduction</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
72 <param name="n_pcs" value="50"/> 72 <param name="n_pcs" value="50"/>
73 <param name="zero_center" value="true"/> 73 <param name="zero_center" value="true"/>
74 <param name="svd_solver" value="arpack"/> 74 <param name="svd_solver" value="arpack"/>
75 <param name="random_seed" value="1"/> 75 <param name="random_seed" value="1"/>
76 <param name="chunked" value="false"/> 76 <param name="chunked" value="false"/>
77 <output name="output_h5" file="run_pca.h5" ftype="h5" compare="sim_size"/> 77 <output name="output_h5" ftype="h5">
78 <output name="output_embed" file="run_pca.embeddings.tsv" ftype="tabular" compare="sim_size" > 78 <assert_contents>
79 <has_h5_keys keys="obsm/X_pca"/>
80 </assert_contents>
81 </output>
82 <output name="output_embed" file="run_pca.embeddings.tsv" ftype="tabular" compare="sim_size" delta_frac="0.1" >
79 <assert_contents> 83 <assert_contents>
80 <has_n_columns n="51"/> 84 <has_n_columns n="51"/>
81 </assert_contents> 85 </assert_contents>
82 </output> 86 </output>
83 </test> 87 </test>