Mercurial > repos > ebi-gxa > scanpy_run_umap

comparison scanpy-run-umap.xml @ 5:6eb7a2e37adf draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:38:52 -0500
parents 0ac2f9f2313b
children aa85725f43a2
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4:3bd1152dd854 5:6eb7a2e37adf
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_run_umap" name="Scanpy RunUMAP" version="@TOOL_VERSION@+galaxy1"> 2 <tool id="scanpy_run_umap" name="Scanpy RunUMAP" version="@TOOL_VERSION@+galaxy6">
3 <description>visualise cell clusters using UMAP</description> 3 <description>visualise cell clusters using UMAP</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
62 </when> 62 </when>
63 </conditional> 63 </conditional>
64 </inputs> 64 </inputs>
65 65
66 <outputs> 66 <outputs>
67 <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: UMAP object"/> 67 <expand macro="output_data_obj" description="UMAP object"/>
68 <data name="output_embed" format="csv" from_work_dir="embeddings.csv" label="${tool.name} on ${on_string}: UMAP embeddings"> 68 <data name="output_embed" format="csv" from_work_dir="embeddings.csv" label="${tool.name} on ${on_string}: UMAP embeddings">
69 <filter>embeddings</filter> 69 <filter>embeddings</filter>
70 </data> 70 </data>
71 </outputs> 71 </outputs>
72 72