Mercurial > repos > ebi-gxa > scanpy_scale_data
comparison scanpy-scale-data.xml @ 26:4cc9362782b4 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
| author | ebi-gxa |
|---|---|
| date | Tue, 27 Feb 2024 16:43:09 +0000 |
| parents | bf30bd6355da |
| children |
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| 25:bf30bd6355da | 26:4cc9362782b4 |
|---|---|
| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> | 2 <tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
| 3 <description>to make expression variance the same for all genes</description> | 3 <description>to make expression variance the same for all genes</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 35 <param name="input_obj_file" value="find_variable_genes.h5"/> | 35 <param name="input_obj_file" value="find_variable_genes.h5"/> |
| 36 <param name="input_format" value="anndata"/> | 36 <param name="input_format" value="anndata"/> |
| 37 <param name="output_format" value="anndata"/> | 37 <param name="output_format" value="anndata"/> |
| 38 <param name="zero_center" value="true"/> | 38 <param name="zero_center" value="true"/> |
| 39 <param name="scale_max" value="10"/> | 39 <param name="scale_max" value="10"/> |
| 40 <output name="output_h5" file="scale_data.h5" ftype="h5" compare="sim_size"/> | 40 <output name="output_h5" ftype="h5"> |
| 41 <assert_contents> | |
| 42 <has_h5_keys keys="var/mean"/> | |
| 43 </assert_contents> | |
| 44 </output> | |
| 41 </test> | 45 </test> |
| 42 </tests> | 46 </tests> |
| 43 | 47 |
| 44 <help><![CDATA[ | 48 <help><![CDATA[ |
| 45 .. class:: infomark | 49 .. class:: infomark |