Mercurial > repos > ebi-gxa > scater_normalize
comparison scater_macros.xml @ 0:c01a342be892 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 9bf9a6e46a330890be932f60d1d996dd166426c4
| author | ebi-gxa |
|---|---|
| date | Wed, 03 Apr 2019 11:38:57 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:c01a342be892 |
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| 1 <macros> | |
| 2 <token name="@TOOL_VERSION@">1.8.4</token> | |
| 3 <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scater.html</token> | |
| 4 <xml name="requirements"> | |
| 5 <requirements> | |
| 6 <requirement type="package" version="0.0.4">bioconductor-scater-scripts</requirement> | |
| 7 <yield/> | |
| 8 </requirements> | |
| 9 </xml> | |
| 10 <xml name="version"> | |
| 11 <version_command><![CDATA[ | |
| 12 echo $(R --version | grep version | grep -v GNU)", scater version" $(R --vanilla --slave -e "library(scater); cat(sessionInfo()\$otherPkgs\$scater\$Version)" 2> /dev/null | grep -v -i "WARNING: ") | |
| 13 ]]></version_command> | |
| 14 </xml> | |
| 15 <token name="@VERSION_HISTORY@"><![CDATA[ | |
| 16 **Version history** | |
| 17 | |
| 18 1.8.4+galaxy0: Initial contribution. Suhaib Mohammed, Ni Huang and Pablo Moreno, Expression Atlas team https://www.ebi.ac.uk/gxa/home at | |
| 19 EMBL-EBI https://www.ebi.ac.uk/ and and Teichmann Lab at Wellcome Sanger Institute. | |
| 20 ]]></token> | |
| 21 <xml name="citations"> | |
| 22 <citations> | |
| 23 <citation type="bibtex"> | |
| 24 @article{doi:10.1093/bioinformatics/btw777, | |
| 25 author = {McCarthy, Davis J and Campbell, Kieran R and Lun, Aaron T L and Wills, Quin F}, | |
| 26 title = {Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R}, | |
| 27 journal = {Bioinformatics}, | |
| 28 volume = {33}, | |
| 29 number = {8}, | |
| 30 pages = {1179-1186}, | |
| 31 year = {2017}, | |
| 32 doi = {10.1093/bioinformatics/btw777}, | |
| 33 URL = {http://dx.doi.org/10.1093/bioinformatics/btw777}, | |
| 34 eprint = {/oup/backfile/content_public/journal/bioinformatics/33/8/10.1093_bioinformatics_btw777/2/btw777.pdf} | |
| 35 } | |
| 36 </citation> | |
| 37 <citation type="bibtex"> | |
| 38 @misc{githubbioconductor-scater-scripts.git, | |
| 39 author = {Jonathan Manning, Ni Huang, Suhaib Mohammed, EBI Gene Expression Team}, | |
| 40 year = {2018}, | |
| 41 title = {Scater-scripts: command line interface for Scater}, | |
| 42 publisher = {GitHub}, | |
| 43 journal = {GitHub repository}, | |
| 44 url = {https://github.com/ebi-gene-expression-group/bioconductor-scater-scripts.git}, | |
| 45 } | |
| 46 </citation> | |
| 47 <yield /> | |
| 48 </citations> | |
| 49 </xml> | |
| 50 </macros> |