Mercurial > repos > ebi-gxa > scmap_index_cell

annotate scmap_macros.xml @ 7:11b4b9b85b9c draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit f1d792b2db8e09e441cc75629d34a13e4fb19153"
author ebi-gxa
date Mon, 04 May 2020 07:14:01 -0400
parents 640982866dfe
children 7c3f9606ed0a
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1 <macros>
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2 <token name="@TOOL_VERSION@">1.6.1</token>
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3 <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token>
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4 <token name="@PROFILE@">18.01</token>
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5 <xml name="requirements">
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6 <requirements>
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7 <requirement type="package" version="0.0.9">scmap-cli</requirement>
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8 <yield/>
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9 </requirements>
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10 </xml>
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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11 <xml name="version">
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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12 <version_command><![CDATA[
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13 echo $(R --version | grep version | grep -v GNU)", scmap version" $(R --vanilla --slave -e "library(scmap); cat(sessionInfo()\$otherPkgs\$scmap\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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14 ]]></version_command>
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15 </xml>
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16 <token name="@VERSION_HISTORY@"><![CDATA[
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17 **Version history**
7
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18 1.6.1+galaxy0: Update scmap-cli to 0.0.9.
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19 1.6.0+galaxy0: Initial contribution. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
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20 ]]></token>
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21 <xml name="citations">
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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22 <citations>
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23 <citation type="bibtex">
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24 @Article{,
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25 title = {scmap - A tool for unsupervised projection of single cell RNA-seq data},
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26 author = {Vladimir Yu. Kiselev and Martin Hemberg},
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27 year = {2017},
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28 journal = {bioRxiv},
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29 url = {http://doi.org/10.1101/150292},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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30 }
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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31 </citation>
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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32 <citation type="bibtex">
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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33 @misc{githubscmap-cli.git,
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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34 author = {Jonathan Manning, EBI Gene Expression Team},
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35 year = {2018},
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36 title = {scmap-cli: command line interface for scmap},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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37 publisher = {GitHub},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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38 journal = {GitHub repository},
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39 url = {https://github.com/ebi-gene-expression-group/scmap-cli.git},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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40 }
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41 </citation>
3
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42 <citation type="doi">10.1101/2020.04.08.032698</citation>
0
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43 <yield />
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44 </citations>
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45 </xml>
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46 </macros>