Mercurial > repos > ebi-gxa > scmap_index_cluster

comparison scmap_macros.xml @ 0:6b24ebf5b7fb draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
author ebi-gxa
date Mon, 16 Sep 2019 09:56:06 -0400
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children e6d99b0652ec
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-1:000000000000 0:6b24ebf5b7fb
1 <macros>
2 <token name="@TOOL_VERSION@">1.6.0</token>
3 <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token>
4 <xml name="requirements">
5 <requirements>
6 <requirement type="package" version="0.0.2">scmap-cli</requirement>
7 <yield/>
8 </requirements>
9 </xml>
10 <xml name="version">
11 <version_command><![CDATA[
12 echo $(R --version | grep version | grep -v GNU)", scmap version" $(R --vanilla --slave -e "library(scmap); cat(sessionInfo()\$otherPkgs\$scmap\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
13 ]]></version_command>
14 </xml>
15 <token name="@VERSION_HISTORY@"><![CDATA[
16 **Version history**
17 1.6.0+galaxy0: Initial contribution. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
18 ]]></token>
19 <xml name="citations">
20 <citations>
21 <citation type="bibtex">
22 @Article{,
23 title = {scmap - A tool for unsupervised projection of single cell RNA-seq data},
24 author = {Vladimir Yu. Kiselev and Martin Hemberg},
25 year = {2017},
26 journal = {bioRxiv},
27 url = {http://doi.org/10.1101/150292},
28 }
29 </citation>
30 <citation type="bibtex">
31 @misc{githubscmap-cli.git,
32 author = {Jonathan Manning, EBI Gene Expression Team},
33 year = {2018},
34 title = {scmap-cli: command line interface for scmap},
35 publisher = {GitHub},
36 journal = {GitHub repository},
37 url = {https://github.com/ebi-gene-expression-group/scmap-cli.git},
38 }
39 </citation>
40 <yield />
41 </citations>
42 </xml>
43 </macros>