Mercurial > repos > ebi-gxa > scmap_preprocess_sce

diff scmap_preprocess_sce.xml @ 0:a74497e18277 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
author ebi-gxa
date Wed, 29 Apr 2020 12:39:06 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/scmap_preprocess_sce.xml	Wed Apr 29 12:39:06 2020 -0400
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+<tool id="scmap_preprocess_sce" name="Scmap pre-process" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+    <description>Pre-process SCE object before running downstream analysis</description>
+    <macros>
+        <import>scmap_macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="exit_code"><![CDATA[
+        scmap-preprocess-sce.R --input-object "${input_single_cell_experiment}" --output-sce-object "${output_single_cell_experiment}"
+        ]]></command>
+    <inputs>
+        <param type="data" name="input_single_cell_experiment" label="Input SCE object" format="rdata" help="SCE object to be pre-processed" />
+    </inputs>
+    <outputs>
+        <data name="output_single_cell_experiment" format="rdata" />
+    </outputs>
+    <help><![CDATA[
+    @HELP@
+    
+    @VERSION_HISTORY@
+    ]]></help>
+    <expand macro="citations" />
+</tool>