Mercurial > repos > ebi-gxa > scmap_scmap_cluster

comparison scmap_scmap_cluster.xml @ 8:2a320bb37bf0 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit bb88d0eb9c193518eb0d05321e3458a10212d3ab"
author ebi-gxa
date Fri, 14 Aug 2020 10:41:04 -0400
parents 40e10f3a1844
children a0da1d3155dd
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7:40e10f3a1844 8:2a320bb37bf0
1 <tool id="scmap_scmap_cluster" name="Scmap cluster projection" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> 1 <tool id="scmap_scmap_cluster" name="Scmap cluster projection" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
2 <description>projects one dataset to another</description> 2 <description>projects one dataset to another</description>
3 <macros> 3 <macros>
4 <import>scmap_macros.xml</import> 4 <import>scmap_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
12 <param type="data" name="project_single_cell_experiment" label="SingleCellExperiment object to project" format="rdata" help="File with serialized SingleCellExperiment object to project onto the index'" /> 12 <param type="data" name="project_single_cell_experiment" label="SingleCellExperiment object to project" format="rdata" help="File with serialized SingleCellExperiment object to project onto the index'" />
13 <param name="threshold" type="float" label="Threshold" value="0.7" help="Threshold on similarity (or probability for SVM and RF)." /> 13 <param name="threshold" type="float" label="Threshold" value="0.7" help="Threshold on similarity (or probability for SVM and RF)." />
14 </inputs> 14 </inputs>
15 <outputs> 15 <outputs>
16 <data name="output_single_cell_experiment" format="rdata" /> 16 <data name="output_single_cell_experiment" format="rdata" />
17 <data name="output_txt" format="csv" /> 17 <data name="output_txt" format="tabular" />
18 </outputs> 18 </outputs>
19 <tests> 19 <tests>
20 <test> 20 <test>
21 <param name="index_single_cell_experiment" value="index_cluster.rds" ftype="rdata"/> 21 <param name="index_single_cell_experiment" value="index_cluster.rds" ftype="rdata"/>
22 <param name="project_single_cell_experiment" value="test_sce.rds" ftype="rdata"/> 22 <param name="project_single_cell_experiment" value="test_sce.rds" ftype="rdata"/>