Mercurial > repos > ebi-gxa > scmap_select_features
comparison scmap_select_features.xml @ 1:953c7ff4069e draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit b9472e45f909300389b426955f4f563b8428ed07
| author | ebi-gxa |
|---|---|
| date | Fri, 25 Oct 2019 08:45:58 -0400 |
| parents | 22b605f49f5f |
| children | 3e22b96ba4fb |
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| 0:22b605f49f5f | 1:953c7ff4069e |
|---|---|
| 3 <macros> | 3 <macros> |
| 4 <import>scmap_macros.xml</import> | 4 <import>scmap_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
| 8 scmap-select-features.R --input-object-file '$input_single_cell_experiment' --n-features '$n_features' --output-object-file '$output_single_cell_experiment' --output-plot-file '$plot' | 8 scmap-preprocess-sce.R --input-object "${input_single_cell_experiment}" --output-sce-object "${input_single_cell_experiment}.preprocessed" && scmap-select-features.R --input-object-file "${input_single_cell_experiment}.preprocessed" --n-features '$n_features' --output-object-file '$output_single_cell_experiment' --output-plot-file '$plot' |
| 9 ]]></command> | 9 ]]></command> |
| 10 <inputs> | 10 <inputs> |
| 11 <param type="data" name="input_single_cell_experiment" label="SingleCellExperiment object" format="rdata" help="File with serialized SingleCellExperiment object" /> | 11 <param type="data" name="input_single_cell_experiment" label="SingleCellExperiment object" format="rdata" help="File with serialized SingleCellExperiment object" /> |
| 12 <param name="n_features" type="integer" label="Number of features" value="500" help="Number of features to be selected" /> | 12 <param name="n_features" type="integer" label="Number of features" value="500" help="Number of features to be selected" /> |
| 13 </inputs> | 13 </inputs> |