Mercurial > repos > ebi-gxa > scmap_select_features
diff scmap_select_features.xml @ 0:22b605f49f5f draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
author | ebi-gxa |
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date | Mon, 16 Sep 2019 09:57:48 -0400 |
parents | |
children | 953c7ff4069e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/scmap_select_features.xml Mon Sep 16 09:57:48 2019 -0400 @@ -0,0 +1,31 @@ +<tool id="scmap_select_features" name="scmap select features" version="@TOOL_VERSION@+galaxy0" python_template_version="3.5"> + <description>finds the most informative features (genes/transcripts) for projection.</description> + <macros> + <import>scmap_macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="exit_code"><![CDATA[ + scmap-select-features.R --input-object-file '$input_single_cell_experiment' --n-features '$n_features' --output-object-file '$output_single_cell_experiment' --output-plot-file '$plot' + ]]></command> + <inputs> + <param type="data" name="input_single_cell_experiment" label="SingleCellExperiment object" format="rdata" help="File with serialized SingleCellExperiment object" /> + <param name="n_features" type="integer" label="Number of features" value="500" help="Number of features to be selected" /> + </inputs> + <outputs> + <data name="output_single_cell_experiment" format="rdata" /> + <data name="plot" format="png" /> + </outputs> + <tests> + <test> + <param name="input_single_cell_experiment" value="test_sce.rds" ftype="rdata"/> + <output name="output_single_cell_experiment" file="select_features.rds"/> + <output name="plot" file="select_features.png"/> + </test> + </tests> + <help><![CDATA[ + @HELP@ + + @VERSION_HISTORY@ + ]]></help> + <expand macro="citations" /> +</tool>