Mercurial > repos > ebi-gxa > scmap_select_features

changeset 2:3e22b96ba4fb draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 542b6e6848acedbbedb6fa2d4b44c8d476597cdd"
author ebi-gxa
date Fri, 03 Apr 2020 06:34:25 -0400
parents 953c7ff4069e
children d0d9c3dfd609
files scmap_macros.xml scmap_select_features.xml
diffstat 2 files changed, 5 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/scmap_macros.xml	Fri Oct 25 08:45:58 2019 -0400
+++ b/scmap_macros.xml	Fri Apr 03 06:34:25 2020 -0400
@@ -1,11 +1,10 @@
 <macros>
     <token name="@TOOL_VERSION@">1.6.0</token>
     <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token>
+    <token name="@PROFILE@">18.01</token>
     <xml name="requirements">
       <requirements>
-        <requirement type="package">openblas</requirement>
-        <requirement type="package">bioconductor-delayedarray</requirement>
-        <requirement type="package" version="0.0.4">scmap-cli</requirement>
+        <requirement type="package" version="0.0.5">scmap-cli</requirement>
             <yield/>
       </requirements>
     </xml>
--- a/scmap_select_features.xml	Fri Oct 25 08:45:58 2019 -0400
+++ b/scmap_select_features.xml	Fri Apr 03 06:34:25 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="scmap_select_features" name="scmap select features" version="@TOOL_VERSION@+galaxy0" python_template_version="3.5">
+<tool id="scmap_select_features" name="scmap select features" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>finds the most informative features (genes/transcripts) for projection.</description>
     <macros>
         <import>scmap_macros.xml</import>
@@ -18,8 +18,8 @@
     <tests>
         <test>
             <param name="input_single_cell_experiment" value="test_sce.rds" ftype="rdata"/>
-            <output name="output_single_cell_experiment" file="select_features.rds"/>
-            <output name="plot" file="select_features.png"/>
+            <output name="output_single_cell_experiment" file="select_features.rds" compare="sim_size"/>
+            <output name="plot" file="select_features.png" compare="sim_size"/>
         </test>
     </tests>
     <help><![CDATA[