Mercurial > repos > ebi-gxa > scmap_select_features

changeset 8:e5aaa5bea06a draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:44:55 +0000
parents 5972aea41e0e
children 91f29745bda6
files scmap_macros.xml scmap_select_features.xml test-data/closest_cells.csv test-data/closest_cells_clusters.csv test-data/closest_cells_clusters.rds test-data/closest_cells_similarities.csv test-data/index_cell.rds test-data/index_cluster.png test-data/index_cluster.rds test-data/project_cluster.csv test-data/project_cluster.rds test-data/select_features.png test-data/select_features.rds test-data/test_sce.rds
diffstat 14 files changed, 4 insertions(+), 112 deletions(-) [+]
line wrap: on
line diff
--- a/scmap_macros.xml	Thu Aug 13 06:12:03 2020 -0400
+++ b/scmap_macros.xml	Fri Nov 27 13:44:55 2020 +0000
@@ -1,10 +1,10 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.6.2</token>
+    <token name="@TOOL_VERSION@">1.6.3</token>
     <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token>
     <token name="@PROFILE@">18.01</token>
     <xml name="requirements">
       <requirements>
-        <requirement type="package" version="0.0.10">scmap-cli</requirement>
+        <requirement type="package" version="0.0.11">scmap-cli</requirement>
             <yield/>
       </requirements>
     </xml>
@@ -15,6 +15,7 @@
     </xml>
     <token name="@VERSION_HISTORY@"><![CDATA[
 **Version history**
+1.6.3+galaxy0: Update scmap-cli to 0.0.11
 1.6.2+galaxy0: Update scmap-cli to 0.0.10
 1.6.1+galaxy0: Update scmap-cli to 0.0.9.
 1.6.0+galaxy0: Initial contribution. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
--- a/scmap_select_features.xml	Thu Aug 13 06:12:03 2020 -0400
+++ b/scmap_select_features.xml	Fri Nov 27 13:44:55 2020 +0000
@@ -19,7 +19,7 @@
         <test>
             <param name="input_single_cell_experiment" value="test_sce.rds" ftype="rdata"/>
             <output name="output_single_cell_experiment" file="select_features.rds" compare="sim_size"/>
-            <output name="plot" file="select_features.png" compare="sim_size"/>
+            <output name="plot" file="select_features.png" compare="sim_size" delta="1000000" />
         </test>
     </tests>
     <help><![CDATA[
--- a/test-data/closest_cells.csv	Thu Aug 13 06:12:03 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
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--- a/test-data/closest_cells_clusters.csv	Thu Aug 13 06:12:03 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
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Binary file test-data/closest_cells_clusters.rds has changed
--- a/test-data/closest_cells_similarities.csv	Thu Aug 13 06:12:03 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
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Binary file test-data/index_cell.rds has changed
Binary file test-data/index_cluster.png has changed
Binary file test-data/index_cluster.rds has changed
--- a/test-data/project_cluster.csv	Thu Aug 13 06:12:03 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,91 +0,0 @@
-,cell,scmap_cluster_labs,scmap_cluster_siml,combined_labs
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-70,Late.blastocyst..1..Cell.10.RPKM.,blast,0.956481724858848,blast
-71,Late.blastocyst..1..Cell.11.RPKM.,blast,0.956159281369748,blast
-72,Late.blastocyst..1..Cell.12.RPKM.,blast,0.96425809974187,blast
-73,Late.blastocyst..2..Cell.1.RPKM.,blast,0.954566650006314,blast
-74,Late.blastocyst..2..Cell.2.RPKM.,blast,0.859795704593317,blast
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-81,Late.blastocyst..2..Cell.9.RPKM.,blast,0.958716824617989,blast
-82,Late.blastocyst..2..Cell.10.RPKM.,blast,0.966000611704395,blast
-83,Late.blastocyst..3..Cell.1.RPKM.,blast,0.830150497819373,blast
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-88,Late.blastocyst..3..Cell.6.RPKM.,blast,0.923562228265187,blast
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-90,Late.blastocyst..3..Cell.8.RPKM.,blast,0.917408664281774,blast
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