Mercurial > repos > ebi-gxa > scpred_get_std_output
comparison scpred_get_std_output.xml @ 0:156b1e9cc269 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
| author | ebi-gxa |
|---|---|
| date | Wed, 08 Apr 2020 06:29:34 -0400 |
| parents | |
| children | a7bf1d2b310b |
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| -1:000000000000 | 0:156b1e9cc269 |
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| 1 <tool id="scpred_get_std_output" name="Get output in standard format" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> | |
| 2 <description>This method allows to export predicted labels in a standardised format, simplifying downstream analyses.</description> | |
| 3 <macros> | |
| 4 <import>scpred_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --output-table "${output_table}" | |
| 9 ]]></command> | |
| 10 <inputs> | |
| 11 <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" /> | |
| 12 <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" /> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data name="output_table" format="txt" /> | |
| 16 </outputs> | |
| 17 <tests> | |
| 18 <test> | |
| 19 <param name="predictions_file" value="predictions_table.txt" /> | |
| 20 <param name="get_scores" value="TRUE" /> | |
| 21 <output name="output_table" file="scpred_output_tbl.txt" compare="sim_size"/> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help><![CDATA[ | |
| 25 @HELP@ | |
| 26 | |
| 27 @VERSION_HISTORY@ | |
| 28 ]]></help> | |
| 29 <expand macro="citations" /> | |
| 30 </tool> |