Mercurial > repos > ebi-gxa > scpred_get_std_output

comparison scpred_get_std_output.xml @ 7:598b1d9dd135 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:45:49 +0000
parents c88135c1efb1
children
comparison
equal deleted inserted replaced
6:9f3ce66cd91f 7:598b1d9dd135
3 <macros> 3 <macros>
4 <import>scpred_macros.xml</import> 4 <import>scpred_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}" 8 scpred_get_std_output.R --predictions-object "${predictions_object}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}"
9 ]]></command> 9 ]]></command>
10 <inputs> 10 <inputs>
11 <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" /> 11 <param type="data" name="predictions_object" label="Predictions Object" format="rdata" help="Path to the predictions file in text format" />
12 <param type="data" name="classifier" label="Classifier object" format="rdata" help="Path to the classifier object used to obtain predictions" /> 12 <param type="data" name="classifier" label="Classifier object" format="rdata" help="Path to the classifier object used to obtain predictions" />
13 <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" /> 13 <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" />
14 </inputs> 14 </inputs>
15 <outputs> 15 <outputs>
16 <data name="output_table" format="txt" /> 16 <data name="output_table" format="txt" />
17 </outputs> 17 </outputs>
18 <tests> 18 <tests>
19 <test> 19 <test>
20 <param name="predictions_file" value="predictions_table.txt" /> 20 <param name="predictions_object" value="predicted_data.rds" />
21 <param name="get_scores" value="TRUE" /> 21 <param name="get_scores" value="True" />
22 <output name="output_table" file="scpred_output_tbl.txt" compare="sim_size"/> 22 <param name="classifier" value="scPred_trained.rds" />
23 <output name="output_table" file="scpred_output_tbl.txt" compare="sim_size" />
23 </test> 24 </test>
24 </tests> 25 </tests>
25 <help><![CDATA[ 26 <help><![CDATA[
26 @HELP@ 27 @HELP@
27 28
28 @VERSION_HISTORY@ 29 @VERSION_HISTORY@
29 ]]></help> 30 ]]></help>
30 <expand macro="citations" /> 31 <expand macro="citations" />