Mercurial > repos > ebi-gxa > scpred_get_std_output
diff scpred_get_std_output.xml @ 7:598b1d9dd135 draft default tip
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
| author | ebi-gxa |
|---|---|
| date | Fri, 27 Nov 2020 13:45:49 +0000 |
| parents | c88135c1efb1 |
| children |
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--- a/scpred_get_std_output.xml Fri Aug 14 11:08:13 2020 -0400 +++ b/scpred_get_std_output.xml Fri Nov 27 13:45:49 2020 +0000 @@ -5,10 +5,10 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}" + scpred_get_std_output.R --predictions-object "${predictions_object}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}" ]]></command> <inputs> - <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" /> + <param type="data" name="predictions_object" label="Predictions Object" format="rdata" help="Path to the predictions file in text format" /> <param type="data" name="classifier" label="Classifier object" format="rdata" help="Path to the classifier object used to obtain predictions" /> <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" /> </inputs> @@ -17,12 +17,13 @@ </outputs> <tests> <test> - <param name="predictions_file" value="predictions_table.txt" /> - <param name="get_scores" value="TRUE" /> - <output name="output_table" file="scpred_output_tbl.txt" compare="sim_size"/> + <param name="predictions_object" value="predicted_data.rds" /> + <param name="get_scores" value="True" /> + <param name="classifier" value="scPred_trained.rds" /> + <output name="output_table" file="scpred_output_tbl.txt" compare="sim_size" /> </test> </tests> - <help><![CDATA[ + <help><![CDATA[ @HELP@ @VERSION_HISTORY@