Mercurial > repos > ebi-gxa > scpred_predict_labels

comparison scpred_predict.xml @ 5:eca76dd511f4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit bb88d0eb9c193518eb0d05321e3458a10212d3ab"
author ebi-gxa
date Fri, 14 Aug 2020 10:47:23 -0400
parents fd06ab29487f
children b869bb6d4b01
comparison
equal deleted inserted replaced
4:fd06ab29487f 5:eca76dd511f4
1 <tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy3"> 1 <tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy0">
2 <description>Make cell type predictions using trained model.</description> 2 <description>Make cell type predictions using trained model.</description>
3 <macros> 3 <macros>
4 <import>scpred_macros.xml</import> 4 <import>scpred_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
27 <param type="data" name="test_labels" optional="true" format="txt" label="Test labels" help="Path to the test labels file for evalutation of model performance in text format" /> 27 <param type="data" name="test_labels" optional="true" format="txt" label="Test labels" help="Path to the test labels file for evalutation of model performance in text format" />
28 <param type="text" name="cell_types_column" value="cell_type2" optional="true" label="Cell types column name" help="Column name of true labels in provided metadata file" /> 28 <param type="text" name="cell_types_column" value="cell_type2" optional="true" label="Cell types column name" help="Column name of true labels in provided metadata file" />
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <data name="output_tbl_path" format="txt" /> 31 <data name="output_tbl_path" format="txt" />
32 <data name="plot_path" format="txt" /> 32 <data name="plot_path" format="png" />
33 <data name="confusion_table" format="txt" /> 33 <data name="confusion_table" format="txt" />
34 </outputs> 34 </outputs>
35 <tests> 35 <tests>
36 <test> 36 <test>
37 <param name="input_object" value="scPred_trained.rds" /> 37 <param name="input_object" value="scPred_trained.rds" />