# HG changeset patch
# User ebi-gxa
# Date 1588342382 14400
# Node ID 82087ae9fe4ed7659c233f29a45ddfc2152a4980
# Parent  03b45c148df77af7e873b8ce4be998d8337169f2
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 2f718294665c9d01702ad765904972f463154cd6"

diff -r 03b45c148df7 -r 82087ae9fe4e scpred_preprocess_data.xml
--- a/scpred_preprocess_data.xml	Wed Apr 29 12:42:08 2020 -0400
+++ b/scpred_preprocess_data.xml	Fri May 01 10:13:02 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="scpred_preprocess_data" name="Scpred pre-process" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="scpred_preprocess_data" name="Scpred pre-process" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
     <description>Pre-process input dataset (no train/test split)</description>
     <macros>
         <import>scpred_macros.xml</import>
@@ -17,7 +17,7 @@
          ]]></command>
     <inputs>
          <param type="data" name="input_sce_object" label="SCE object containing expression data" format="rdata" help="File with serialized SingleCellExperiment object that contains expression matrix" />
-         <param type="text" name="norm_counts_slot" value="normcounts" label="Normalised counts slot" help="Slot containing normalised counts in input SCE object" />
+         <param type="text" name="norm_counts_slot" optional="true" value="normcounts" label="Normalised counts slot" help="Slot containing normalised counts in input SCE object" />
     </inputs> 
     <outputs>
         <data name="output_mat_object" format="rdata" />