Mercurial > repos > ebi-gxa > scpred_train_model

annotate scpred_macros.xml @ 6:b3c543769af9 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit e2e8344bd707659bcb2bdfcfdda648179884bd53"
author ebi-gxa
date Fri, 14 Aug 2020 11:06:23 -0400
parents 33fa4949e080
children a7269f8f45aa
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b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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1 <macros>
6
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2 <token name="@TOOL_VERSION@">1.0.1</token>
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3 <token name="@HELP@">More information can be found at https://joseah.github.io/post/introduction-to-scpred/</token>
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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4 <token name="@PROFILE@">18.01</token>
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5 <xml name="requirements">
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6 <requirements>
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7 <requirement type="package" version="0.0.9">scpred-cli</requirement>
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8 <yield/>
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9 </requirements>
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10 </xml>
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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11 <xml name="version">
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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12 <version_command><![CDATA[
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13 echo $(R --version | grep version | grep -v GNU)", scpred version" $(R --vanilla --slave -e "library(scpred); cat(sessionInfo()\$otherPkgs\$scpred\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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14 ]]></version_command>
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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15 </xml>
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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16 <token name="@VERSION_HISTORY@"><![CDATA[
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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17 **Version history**
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33fa4949e080 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit bb88d0eb9c193518eb0d05321e3458a10212d3ab"
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18 1.0.1+galaxy0: Update output format from csv to tsv
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19 1.0.0+galaxy0: Initilal contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
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20 ]]></token>
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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21 <xml name="citations">
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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22 <citations>
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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23 <citation type="bibtex">
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24 @article{Alquicira-Hernandez2019,
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25 author = {Alquicira-Hernandez, Jose and Sathe, Anuja and Ji, Hanlee P and Nguyen, Quan and Powell, Joseph E},
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26 journal = {Genome Biology},
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27 title = {{scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data}},
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28 url = {https://doi.org/10.1186/s13059-019-1862-5},
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29 year = {2019}
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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30 }
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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31 </citation>
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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32 <citation type="bibtex">
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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33 @misc{githubscpred-cli.git,
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34 author = {Andrey Solovyev, EBI Gene Expression Team},
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35 year = {2019},
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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36 title = {scpred-cli: command line interface for ScPred tool},
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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37 publisher = {GitHub},
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38 journal = {GitHub repository},
b17acf485397 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
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39 url = {https://github.com/ebi-gene-expression-group/scpred-cli.git},
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40 }
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41 </citation>
1
01493c9cdfa7 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
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42 <citation type="doi">10.1101/2020.04.08.032698</citation>
0
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43 <yield />
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44 </citations>
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45 </xml>
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46 </macros>