Mercurial > repos > ebi-gxa > scpred_train_model

comparison scpred_train_model.xml @ 1:01493c9cdfa7 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
author ebi-gxa
date Fri, 24 Apr 2020 11:27:27 -0400
parents b17acf485397
children 46c2b1454118
comparison
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0:b17acf485397 1:01493c9cdfa7
3 <macros> 3 <macros>
4 <import>scpred_macros.xml</import> 4 <import>scpred_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 scpred_train_model.R --input-object "${input_object}" --model "${model}" --output-path "${output_obj_path}" --train-probs-plot "${train_probs_plot}" 8 scpred_train_model.R --input-object "${input_object}" --model "${model}" --output-path "${output_obj_path}" --train-probs-plot "${train_probs_plot}"
9 #if $train_id
10 --train-id '${train_id}'
11 #end if
9 ]]></command> 12 ]]></command>
10 <inputs> 13 <inputs>
11 <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format"/> 14 <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format"/>
15 <param type="text" name="train_id" label="Dataset ID" help="ID of the training dataset" />
12 <param type="text" name="model" label="Model type to train" value="svmRadial" help="Model type used for training. Must be one of the models supported by Caret package. Default: svmRadial" /> 16 <param type="text" name="model" label="Model type to train" value="svmRadial" help="Model type used for training. Must be one of the models supported by Caret package. Default: svmRadial" />
13 </inputs> 17 </inputs>
14 <outputs> 18 <outputs>
15 <data name="output_obj_path" format="rdata" /> 19 <data name="output_obj_path" format="rdata" />
16 <data name="train_probs_plot" format="png" /> 20 <data name="train_probs_plot" format="png" />