Mercurial > repos > ebi-gxa > scpred_train_model

comparison scpred_macros.xml @ 0:b17acf485397 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
author ebi-gxa
date Wed, 08 Apr 2020 06:28:47 -0400
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-1:000000000000 0:b17acf485397
1 <macros>
2 <token name="@TOOL_VERSION@">1.0.0</token>
3 <token name="@HELP@">More information can be found at https://joseah.github.io/post/introduction-to-scpred/</token>
4 <token name="@PROFILE@">18.01</token>
5 <xml name="requirements">
6 <requirements>
7 <requirement type="package" version="0.0.5">scpred-cli</requirement>
8 <yield/>
9 </requirements>
10 </xml>
11 <xml name="version">
12 <version_command><![CDATA[
13 echo $(R --version | grep version | grep -v GNU)", scpred version" $(R --vanilla --slave -e "library(scpred); cat(sessionInfo()\$otherPkgs\$scpred\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
14 ]]></version_command>
15 </xml>
16 <token name="@VERSION_HISTORY@"><![CDATA[
17 **Version history**
18 1.0.0+galaxy0: Initilal contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
19 ]]></token>
20 <xml name="citations">
21 <citations>
22 <citation type="bibtex">
23 @article{Alquicira-Hernandez2019,
24 author = {Alquicira-Hernandez, Jose and Sathe, Anuja and Ji, Hanlee P and Nguyen, Quan and Powell, Joseph E},
25 journal = {Genome Biology},
26 title = {{scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data}},
27 url = {https://doi.org/10.1186/s13059-019-1862-5},
28 year = {2019}
29 }
30 </citation>
31 <citation type="bibtex">
32 @misc{githubscpred-cli.git,
33 author = {Andrey Solovyev, EBI Gene Expression Team},
34 year = {2019},
35 title = {scpred-cli: command line interface for ScPred tool},
36 publisher = {GitHub},
37 journal = {GitHub repository},
38 url = {https://github.com/ebi-gene-expression-group/scpred-cli.git},
39 }
40
41 </citation>
42 <yield />
43 </citations>
44 </xml>
45 </macros>
46