Mercurial > repos > ebi-gxa > seurat_find_clusters

comparison seurat_find_clusters.xml @ 5:eefaffdcd441 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author ebi-gxa
date Fri, 04 Mar 2022 07:25:55 +0000
parents 8ed848ef86fd
children
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4:8ed848ef86fd 5:eefaffdcd441
1 <tool id="seurat_find_clusters" name="Seurat FindClusters" version="@SEURAT_VERSION@+galaxy0"> 1 <tool id="seurat_find_clusters" name="Seurat FindClusters" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
2 <description>find clusters of cells</description> 2 <description>find clusters of cells</description>
3 <macros> 3 <macros>
4 <import>seurat_macros.xml</import> 4 <import>seurat_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
76 </outputs> 76 </outputs>
77 77
78 <tests> 78 <tests>
79 <!-- Ensure count matrix input works --> 79 <!-- Ensure count matrix input works -->
80 <test> 80 <test>
81 <param name="rds_seurat_file" ftype="rdata" value="neighbours_seurat.rds"/> 81 <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-neighbours.rds"/>
82 <output name="rds_seurat_file" ftype="rdata" value="cluster_seurat.rds" compare="sim_size"/> 82 <output name="rds_seurat_file" ftype="rdata" >
83 <output name="output_tab" value="clusters.txt" compare="sim_size" delta="1000000" /> 83 <assert_contents>
84 <has_size value="5064329" delta="200000"/>
85 </assert_contents>
86 </output>
87 <output name="output_tab" >
88 <assert_contents>
89 <has_n_lines n="92" />
90 </assert_contents>
91 </output>
84 </test> 92 </test>
85 </tests> 93 </tests>
86 <help><![CDATA[ 94 <help><![CDATA[
87 .. class:: infomark 95 .. class:: infomark
88 96