Mercurial > repos > ebi-gxa > seurat_find_markers

diff seurat_find_markers.xml @ 5:3dd20b758756 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author ebi-gxa
date Fri, 04 Mar 2022 07:26:16 +0000
parents a1842dbe01cd
children 07fc9f4841b3
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--- a/seurat_find_markers.xml	Fri Nov 27 13:48:02 2020 +0000
+++ b/seurat_find_markers.xml	Fri Mar 04 07:26:16 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="seurat_find_markers" name="Seurat FindMarkers" version="@SEURAT_VERSION@+galaxy0">
+<tool id="seurat_find_markers" name="Seurat FindMarkers" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
     <description>find markers (differentially expressed genes)</description>
     <macros>
         <import>seurat_macros.xml</import>
@@ -79,8 +79,12 @@
 
     <tests>
         <test>
-            <param name="rds_seurat_file" ftype="rdata" value="cluster_seurat.rds"/>
-            <output name="output" value="markers.csv" compare="sim_size" delta="1000000"/>
+            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-clusters.rds"/>
+            <output name="output" >
+              <assert_contents>
+                <has_n_lines n="1038" />
+              </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[