Mercurial > repos > ebi-gxa > seurat_find_neighbours
diff seurat_find_neighbours.xml @ 4:99d628557c47 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author | ebi-gxa |
---|---|
date | Fri, 04 Mar 2022 07:29:06 +0000 |
parents | ab622ffd7c7f |
children |
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--- a/seurat_find_neighbours.xml Fri Nov 27 13:48:19 2020 +0000 +++ b/seurat_find_neighbours.xml Fri Mar 04 07:29:06 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="seurat_find_neighbours" name="Seurat FindNeighbours" version="@SEURAT_VERSION@+galaxy0"> +<tool id="seurat_find_neighbours" name="Seurat FindNeighbours" profile="18.01" version="@SEURAT_VERSION@+galaxy0"> <description>constructs a Shared Nearest Neighbor (SNN) Graph</description> <macros> <import>seurat_macros.xml</import> @@ -86,10 +86,14 @@ <tests> <test> - <param name="rds_seurat_file" ftype="rdata" value="pca_seurat.rds"/> + <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-pca.rds"/> <param name="compute_snn" value="True" /> <param name="reduction" value="pca" /> - <output name="rds_seurat_file" ftype="rdata" value="neighbours_seurat.rds" compare="sim_size" delta="10000000" /> + <output name="rds_seurat_file" ftype="rdata" > + <assert_contents> + <has_size value="5054400" delta="200000"/> + </assert_contents> + </output> </test> </tests> <help><![CDATA[