Mercurial > repos > ebi-gxa > seurat_find_neighbours

changeset 3:ab622ffd7c7f draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:48:19 +0000
parents 262943cd4821
children 99d628557c47
files seurat_find_neighbours.xml seurat_macros.xml
diffstat 2 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/seurat_find_neighbours.xml	Sat Jul 11 08:42:53 2020 -0400
+++ b/seurat_find_neighbours.xml	Fri Nov 27 13:48:19 2020 +0000
@@ -86,8 +86,10 @@
 
     <tests>
         <test>
-            <param name="input" ftype="rdata" value="seurat.rds"/>
-            <output name="rds_seurat_file" ftype="rdata" value="out_filter.rds" compare="sim_size"/>
+            <param name="rds_seurat_file" ftype="rdata" value="pca_seurat.rds"/>
+            <param name="compute_snn" value="True" />
+            <param name="reduction" value="pca" />
+            <output name="rds_seurat_file" ftype="rdata" value="neighbours_seurat.rds" compare="sim_size" delta="10000000" />
         </test>
     </tests>
     <help><![CDATA[
--- a/seurat_macros.xml	Sat Jul 11 08:42:53 2020 -0400
+++ b/seurat_macros.xml	Fri Nov 27 13:48:19 2020 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@VERSION@">0.0.7</token>
-    <token name="@SEURAT_VERSION@">3.1.1</token>
+    <token name="@VERSION@">0.0.8</token>
+    <token name="@SEURAT_VERSION@">3.1.2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">seurat-scripts</requirement>
@@ -96,6 +96,7 @@
 
     <token name="@VERSION_HISTORY@"><![CDATA[
 **Version history**
+3.1.2_0.0.8: Upd ate metadata parsing
 
 3.1.1_0.0.7: Exposes perplexity and enables tab input.