Mercurial > repos > ebi-gxa > seurat_find_variable_genes

comparison seurat_find_variable_genes.xml @ 5:5be60722113a draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author ebi-gxa
date Fri, 04 Mar 2022 07:26:36 +0000
parents 051953328516
children
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4:051953328516 5:5be60722113a
1 <tool id="seurat_find_variable_genes" name="Seurat FindVariableGenes" version="@SEURAT_VERSION@+galaxy0"> 1 <tool id="seurat_find_variable_genes" name="Seurat FindVariableGenes" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
2 <description>identify variable genes</description> 2 <description>identify variable genes</description>
3 <macros> 3 <macros>
4 <import>seurat_macros.xml</import> 4 <import>seurat_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
56 <data name="output_tab" format="tabular" from_work_dir="*.tab" label="${tool.name} on ${on_string}: Variable genes tabular file"/> 56 <data name="output_tab" format="tabular" from_work_dir="*.tab" label="${tool.name} on ${on_string}: Variable genes tabular file"/>
57 </outputs> 57 </outputs>
58 58
59 <tests> 59 <tests>
60 <test> 60 <test>
61 <param name="rds_seurat_file" ftype="rdata" value="normalised_seurat.rds"/> 61 <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-normalised.rds"/>
62 <output name="rds_seurat_file" ftype="rdata" value="variable_genes_seurat.rds" compare="sim_size" delta="1000000" /> 62 <output name="rds_seurat_file" ftype="rdata">
63 <output name="output_tab" value="filtered_genes.txt" compare="sim_size" delta="1000000" /> 63 <assert_contents>
64 <has_size value="2720178" delta="200000"/>
65 </assert_contents>
66 </output>
64 </test> 67 </test>
65 </tests> 68 </tests>
66 <help><![CDATA[ 69 <help><![CDATA[
67 .. class:: infomark 70 .. class:: infomark
68 71