# HG changeset patch # User ebi-gxa # Date 1574680283 18000 # Node ID 3d0bfc2a233ee36572cee6735bb12de66b4e03f7 # Parent 6166efaeb4a6fd8189dfd4dd4d0a964b1e196198 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 0463f230d18201c740851d72e31a5024f391207f diff -r 6166efaeb4a6 -r 3d0bfc2a233e seurat_macros.xml --- a/seurat_macros.xml Wed Apr 03 11:18:45 2019 -0400 +++ b/seurat_macros.xml Mon Nov 25 06:11:23 2019 -0500 @@ -1,34 +1,110 @@ - - 0.0.5 - + 0.0.6 + 3.1.1 seurat-scripts - /dev/null | grep -v -i "WARNING: ") ]]> + + + + + + + + + + + + + + + + + + + + + + + + + #if $input.format == "anndata" + --input-object-file '$input.anndata_file' --input-format anndata + #else if $input.format == "loom" + --input-object-file '$input.loom_file' --input-format loom + #else if $input.format == "rds_seurat" + --input-object-file '$input.rds_seurat_file' --input-format seurat + #else if $input.format == "rds_sce" + --input-object-file '$input.rds_sce_file' --input-format singlecellexperiment + #end if + + + + + + + + + + + + + format == 'loom' + + + format == 'rds_seurat' + + + format == 'rds_sce' + + + + + #if $format == "anndata" + --output-object-file '$anndata_file' --output-format anndata + #else if $format == "loom" + --output-object-file seurat_obj.loom --output-format loom + #else if $format == "rds_seurat" + --output-object-file '$rds_seurat_file' --output-format seurat + #else if $format == "rds_sce" + --output-object-file '$rds_sce_file' --output-format singlecellexperiment + #end if + + - + + + diff -r 6166efaeb4a6 -r 3d0bfc2a233e seurat_scale_data.xml --- a/seurat_scale_data.xml Wed Apr 03 11:18:45 2019 -0400 +++ b/seurat_scale_data.xml Mon Nov 25 06:11:23 2019 -0500 @@ -1,4 +1,4 @@ - + scale and center genes seurat_macros.xml @@ -8,21 +8,21 @@ - - - + + + + + ^[\(\w\)]+$ + + + - + + @@ -61,13 +65,13 @@ - + - +