Mercurial > repos > ebi-gxa > suite_scanpy_scripts

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 2db372e91d658f2c139ff282ffb493ea56f581f8-dirty
author ebi-gxa
date Fri, 14 Apr 2023 13:14:02 +0000
parents ea861df1ddbf
children 80731f05345f
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<?xml version="1.0" ?>
<repositories description="scanpy-scripts, command-line wrappers around Scanpy.">
    <repository owner="ebi-gxa" name="anndata_ops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7ebc22f77d86"/>
    <repository owner="ebi-gxa" name="scanpy_filter_cells" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e9283529cba1"/>
    <repository owner="ebi-gxa" name="scanpy_filter_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="474a69c47184"/>
    <repository owner="ebi-gxa" name="scanpy_find_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2ccd9f9e2cd0"/>
    <repository owner="ebi-gxa" name="scanpy_find_markers" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="81c34e67f262"/>
    <repository owner="ebi-gxa" name="scanpy_find_variable_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2861ca3bfe4d"/>
    <repository owner="ebi-gxa" name="scanpy_integrate_bbknn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1fb88fd7dce5"/>
    <repository owner="ebi-gxa" name="scanpy_integrate_combat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3c2ff50cef4a"/>
    <repository owner="ebi-gxa" name="scanpy_integrate_harmony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3111bcf039dd"/>
    <repository owner="ebi-gxa" name="scanpy_integrate_mnn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3ba9371733a2"/>
    <repository owner="ebi-gxa" name="scanpy_plot_scrublet" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2d3b13bb704a"/>
    <repository owner="ebi-gxa" name="scanpy_multiplet_scrublet" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b8126b3bf5d0"/>
    <repository owner="ebi-gxa" name="scanpy_compute_graph" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6417cccad133"/>
    <repository owner="ebi-gxa" name="scanpy_normalise_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6b97ffba31da"/>
    <repository owner="ebi-gxa" name="scanpy_parameter_iterator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a8c73996ac50"/>
    <repository owner="ebi-gxa" name="scanpy_plot_embed" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="35f6611fb8c3"/>
    <repository owner="ebi-gxa" name="scanpy_plot_trajectory" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f489ccdd423c"/>
    <repository owner="ebi-gxa" name="scanpy_read_10x" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9afcfcd1d215"/>
    <repository owner="ebi-gxa" name="scanpy_regress_variable" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1200b55768ce"/>
    <repository owner="ebi-gxa" name="scanpy_run_diffmap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e2ca1846080f"/>
    <repository owner="ebi-gxa" name="scanpy_run_dpt" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2e06dabb3f2f"/>
    <repository owner="ebi-gxa" name="scanpy_run_fdg" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7c6581b57ad4"/>
    <repository owner="ebi-gxa" name="scanpy_run_paga" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4e7d55438238"/>
    <repository owner="ebi-gxa" name="scanpy_run_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="59028945c857"/>
    <repository owner="ebi-gxa" name="scanpy_run_tsne" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="181d61d2f3cd"/>
    <repository owner="ebi-gxa" name="scanpy_run_umap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bd4a244faeb8"/>
    <repository owner="ebi-gxa" name="scanpy_scale_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f86b2c3bc459"/>
</repositories>