# HG changeset patch
# User ebi-gxa
# Date 1689413100 0
# Node ID 97483e5ec21efd435b125285ffadc9c8126a3753
# Parent  544d44faa8bf2d29861cf7a55078046464af22b1
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/ucsc-cell-browser/.shed.yml commit 30c232088d42557d13359dfa26f9c7ce5edfc444

diff -r 544d44faa8bf -r 97483e5ec21e cell-browser.xml
--- a/cell-browser.xml	Sat Apr 17 23:42:28 2021 +0000
+++ b/cell-browser.xml	Sat Jul 15 09:25:00 2023 +0000
@@ -1,10 +1,11 @@
-<tool id="ucsc_cell_browser" name="UCSC Cell Browser" version="1.0.0+galaxy0" profile="18.01">
+<tool id="ucsc_cell_browser" name="UCSC Cell Browser" version="1.0.0+galaxy1" profile="18.01">
   <description>displays single-cell clusterized data in an interactive web application.</description>
   <requirements>
     <requirement type="package" version="1.0.0">ucsc-cell-browser</requirement>
   </requirements>
 <stdio>
 <exit_code range="1:" />
+<regex source="both" match="Killed" level="fatal_oom" description="Killed, most likely due to OOM" />
 </stdio>
 <command><![CDATA[
 #if $input_type.expression_source == "native-cell-browser":
diff -r 544d44faa8bf -r 97483e5ec21e get_test_data.sh
--- a/get_test_data.sh	Sat Apr 17 23:42:28 2021 +0000
+++ b/get_test_data.sh	Sat Jul 15 09:25:00 2023 +0000
@@ -1,3 +1,4 @@
 #!/usr/bin/env bash
 wget --retry-connrefused --waitretry=1 --read-timeout=20 --timeout=15 -t 3 http://ftp.ebi.ac.uk/pub/databases/microarray/data/atlas/sc_experiments/E-MTAB-6077/E-MTAB-6077.project.h5ad
+mkdir -p test-data
 mv E-MTAB-6077.project.h5ad test-data/