Mercurial > repos > ecology > aquainfra_ogc_api_processes

annotate macros.xml @ 6:5acff8859db2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 1f5e22a210b8a395f1c7b48f54e03e781a1b34c4
author ecology
date Tue, 13 May 2025 17:57:37 +0000
parents d413a6b6cebf
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
1 <macros>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
2 <xml name="requirements">
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
3 <requirements>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
4 <requirement type="package" version="4.3.1">r-base</requirement>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
5 <requirement type="package" version="1.20.4">r-getopt</requirement>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
6 <requirement type="package" version="0.2.3">r-httr2</requirement>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
7 <requirement type="package" version="1.8.7">r-jsonlite</requirement>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
8 </requirements>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
9 </xml>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
10 <xml name="citations">
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
11 <citations>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
12 <citation type="bibtex">@Manual{httr2, title = {httr2: Perform HTTP Requests and Process the Responses}, author = {Hadley Wickham}, year = {2023}, note = {R package version 1.0.0, https://github.com/r-lib/httr2}, url = {https://httr2.r-lib.org},}</citation>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
13 <citation type="doi">10.48550/arXiv.1403.2805</citation>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
14 </citations>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
15 </xml>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
16 <xml name="help">
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
17 <help>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
18 Use the dropdown menu at the top to select the OGC API processes hosted on https://aqua.igb-berlin.de/pygeoapi-dev/processes and then complete the corresponding form to run the service.
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
19 </help>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
20 </xml>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
21 <xml name="tests">
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
22 <tests>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
23 <test>
3
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
24 <conditional name="conditional_process">
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
25 <param name="select_process" value="points-att-polygon"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
26 <param name="input_data" value="points_att_polygon_test_input_2.txt"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
27 <param name="regions" value="points_att_polygon_test_input_1.txt"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
28 <param name="colname_long" value="longitude"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
29 <param name="colname_lat" value="latitude"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
30 </conditional>
0
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
31 <output name="output_data">
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
32 <assert_contents>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
33 <has_n_lines n="1"/>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
34 </assert_contents>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
35 </output>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
36 </test>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
37 <test>
3
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
38 <conditional name="conditional_process">
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
39 <param name="select_process" value="map-shapefile-points"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
40 <param name="regions" value="points_att_polygon_test_input_1.txt"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
41 <param name="input_data" value="points_att_polygon_test_input_3.txt"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
42 <param name="colname_long" value="longitude"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
43 <param name="colname_lat" value="latitude"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
44 <param name="colname_value_name" value="transparency_m"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
45 <param name="colname_region_id" value="HELCOM_ID"/>
d413a6b6cebf planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 82b4eef37ab55a62d75ff42e96fca1e07da8d764
ecology
parents: 0
diff changeset
46 </conditional>
0
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
47 <output name="output_data">
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
48 <assert_contents>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
49 <has_n_lines n="1"/>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
50 </assert_contents>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
51 </output>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
52 </test>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
53 </tests>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
54 </xml>
0077885b6f1d planemo upload for repository https://github.com/AquaINFRA/tools-ecology/tree/master commit 6db8e8425f0525fc2e5df8cb43beb3b14024d0ab
ecology
parents:
diff changeset
55 </macros>