Mercurial > repos > ecology > argo_getdata

annotate argo_getdata.py @ 1:28c8f085d1b4 draft

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
author ecology
date Thu, 01 Aug 2024 09:46:52 +0000
parents 055a934a380f
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055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
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1 # author: Marie Jossé
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3 # Python script
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5 #############################
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6 # Argo data access #
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7 #############################
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9 # Packages : argopy
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12 # Load arguments
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13 import argparse
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14 import sys
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16 import argopy
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18 command_line_args = sys.argv[1:]
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21 parser = argparse.ArgumentParser(description="Retrieve argo Data")
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22 # Add arguments
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24 parser.add_argument("--user", type=str,
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25 help="User mode : standard, expert or research")
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26 parser.add_argument("--cardinal_1", type=float, help="Longitude min")
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27 parser.add_argument("--cardinal_2", type=float, help="Longitude max")
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28 parser.add_argument("--cardinal_3", type=float, help="Latitude min")
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29 parser.add_argument("--cardinal_4", type=float, help="Latitude max")
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30 parser.add_argument("--pressure_1", type=float, help="Pressure min")
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31 parser.add_argument("--pressure_2", type=float, help="Pressure max")
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32 parser.add_argument("--date_1", type=str, help="Starting date")
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33 parser.add_argument("--date_2", type=str, help="Ending date.")
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34 parser.add_argument("--wmo", type=str, help="WMO: argo's identifier")
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35 parser.add_argument("--profile", type=str, help="Number of profiles")
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36 parser.add_argument("--params", type=str, help="List of bgc parameters")
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37 parser.add_argument("--measured", type=str, help="List of bgc parameters")
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38 parser.add_argument("--output_argo", type=str, help="Output data from argo")
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40 args = parser.parse_args(command_line_args)
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43 # Parse the command line arguments
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45 print(args)
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46 # Import data
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47
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48 user = args.user
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49 cardinal_1 = args.cardinal_1
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50 cardinal_2 = args.cardinal_2
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51 cardinal_3 = args.cardinal_3
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52 cardinal_4 = args.cardinal_4
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53 pressure_1 = args.pressure_1
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54 pressure_2 = args.pressure_2
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55 date_1 = args.date_1
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56 date_2 = args.date_2
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57 wmo = args.wmo
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58 if wmo is not None:
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59 wmo = list(map(int, wmo.split(",")))
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60 profile = args.profile
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61 if profile is not None:
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62 profile = list(map(int, profile.split(",")))
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63 params = args.params
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64 if params is not None:
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65 params = params.split(",")
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66 if len(params) == 83:
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67 params = "all"
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68 measured = args.measured
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69 if measured is not None:
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70 measured = measured.split(",")
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72 # Let’s import the argopy data fetcher:
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74 ######################
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75 # User mode #
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76 ######################
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77 # By default,
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78 # all argopy data fetchers are set to work with a standard user mode.
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79 # To change that
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81 argopy.set_options(mode=user)
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83 ######################
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84 # Fetching Argo data #
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85 ######################
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86 # Data selection #
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87
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88 # To access Argo data with a DataFetcher,
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89 # you need to define how to select your data of interest.
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90 # argopy provides 3 different data selection methods:
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91
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
92 argo_data = argopy.DataFetcher()
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
93
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
94 # 🗺 For a space/time domain #
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
95
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
96 if (cardinal_1 is not None):
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
97 mode = "region"
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
98 argo_data = argo_data.region([cardinal_1, cardinal_2,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
99 cardinal_3, cardinal_4,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
100 pressure_1, pressure_2,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
101 date_1, date_2])
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
102
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
103 # ⚓ For one or more profiles #
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
104 # Use the fetcher access point argopy.DataFetcher.profile()
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
105 # to specify the float WMO platform number
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
106 # and the profile cycle number(s) to retrieve profiles for.
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
107 elif (wmo is not None and profile is not None):
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
108 argo_data = argo_data.profile(wmo, profile)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
109 # can also be argo_data = argo_data.profile(6902755, [3, 12])
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
110 mode = "profile"
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
111
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
112 # 🤖 For one or more floats #
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
113 # If you know the Argo float unique identifier number called a WMO number
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
114 # you can use the fetcher access point DataFetcher.float()
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
115 # to specify one or more float WMO platform numbers to select.
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
116 else:
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
117 argo_data = argo_data.float(wmo)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
118 # can also be argo_data = argo_data.float([6902746, 6902755])
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
119 mode = "float"
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
120
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
121 # Data sources #
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
122 # Let’s start with standard import:
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
123 # argopy.reset_options()
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
124 # Specify data source erddap, gdac or argovis
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
125
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
126 # if (ftp != "") :
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
127 # argopy.set_options(src = "gdac", ftp = ftp)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
128 # else :
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
129 # argopy.set_options(src = "erddap")
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
130
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
131 # With remote, online data sources,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
132 # it may happens that the data server is experiencing down time.
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
133 print(argopy.status())
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
134
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
135 # Dataset #
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
136 # Argo data are distributed as a single dataset.
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
137 # It is referenced at https://doi.org/10.17882/42182.
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
138 # But they are several Argo missions with specific files and parameters
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
139 # that need special handling by argopy, namely:
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
140 # - the core Argo Mission: from floats that measure temperature,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
141 # salinity, pressure down to 2000m,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
142 # - the Deep Argo Mission: from floats that measure temperature,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
143 # salinity, pressure down to 6000m,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
144 # - and the BGC-Argo Mission: from floats that measure temperature,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
145 # salinity, pressure and oxygen, pH, nitrate, chlorophyll,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
146 # backscatter, irradiance down to 2000m.
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
147 # You can choose between phy or bgc
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
148 if (params is None):
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
149 argopy.set_options(dataset="phy")
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
150 else:
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
151 argopy.set_options(dataset="bgc")
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
152 if (measured != ['None'] and measured is not None):
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
153 argo_data = argopy.DataFetcher(params=params, measured=measured)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
154 if (mode == "region"):
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
155 argo_data = argo_data.region([cardinal_1, cardinal_2,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
156 cardinal_3, cardinal_4,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
157 pressure_1, pressure_2,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
158 date_1, date_2])
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
159 elif (mode == "profile"):
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
160 argo_data = argo_data.profile(wmo, profile)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
161 else:
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
162 argo_data = argo_data.float(wmo)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
163 else:
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
164 argo_data = argopy.DataFetcher(params=params, measured=None)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
165 if (mode == "region"):
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
166 argo_data = argo_data.region([cardinal_1, cardinal_2,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
167 cardinal_3, cardinal_4,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
168 pressure_1, pressure_2,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
169 date_1, date_2])
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
170 elif (mode == "profile"):
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
171 argo_data = argo_data.profile(wmo, profile)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
172 else:
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
173 argo_data = argo_data.float(wmo)
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
174
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
175 # Data fetching #
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
176 # To fetch (i.e. access, download, format) Argo data,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
177 # argopy provides the DataFetcher class.
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
178 # Several DataFetcher arguments exist to help you select the dataset,
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
179 # the data source and the user mode the most suited for your applications;
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
180 # and also to improve performances.
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
ecology
parents:
diff changeset
181
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182 # You define the selection of data you want to fetch
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
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183 # with one of the DataFetcher methods: region, float or profile.
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184 # 2 lines to download Argo data: import and fetch !
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186 argo_data = argo_data.load().data
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187 argo_data.to_netcdf("argo_data.nc")
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189 # argo_metadata = argo_data.to_index()
055a934a380f planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit d3171d27d35f51b8e7464082610431642f1e4660
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191 print(argo_data)