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comparison cb_ivr.xml @ 2:bcbad4f83dec draft default tip

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planemo upload for repository https://github.com/Marie59/champ_blocs commit 075fd90d1a39ae7912b48549e5537971635b9620
author ecology
date Sat, 18 Mar 2023 16:49:19 +0000
parents b67730406f1b
children
comparison
equal deleted inserted replaced
1:b67730406f1b 2:bcbad4f83dec
1 <tool id="cb_ivr" name="IVR" version="@VERSION@" profile = "20.01"> 1 <tool id="cb_ivr" name="IVR" version="@VERSION@" profile="20.01">
2 <description>indicator</description> 2 <description>indicator</description>
3 <macros> 3 <macros>
4 <import>macro.xml</import> 4 <import>macro.xml</import>
5 </macros> 5 </macros>
6 <expand macro="cb_requirements"> 6 <requirements>
7 <requirement type="package" version="2.19">r-rmarkdown</requirement> 7 <requirement type="package" version="1.0.10">r-dplyr</requirement>
8 <requirement type="package" version="1.2.1">r-tidyr</requirement>
9 <requirement type="package" version="1.4.1">r-stringr</requirement>
10 <requirement type="package" version="3.1.8">r-tibble</requirement>
11 <requirement type="package" version="1.40">r-knitr</requirement>
12 <requirement type="package" version="0.6_8">r-gmp</requirement>
13 <requirement type="package" version="2.0.3">r-magrittr</requirement>
14 <requirement type="package" version="2.18">r-rmarkdown</requirement>
8 <requirement type="package" version="0.2.4">r-officedown</requirement> 15 <requirement type="package" version="0.2.4">r-officedown</requirement>
9 <requirement type="package" version="1.3.2">r-tidyverse</requirement> 16 <requirement type="package" version="1.3.2">r-tidyverse</requirement>
10 <requirement type="package" version="0.5.0">r-officer</requirement> 17 <requirement type="package" version="0.5.1">r-officer</requirement>
11 <requirement type="package" version="0.8.3">r-flextable</requirement> 18 <requirement type="package" version="0.8.3">r-flextable</requirement>
12 <requirement type="package" version="3.4">r-ggplot2</requirement> 19 <requirement type="package" version="3.4.0">r-ggplot2</requirement>
13 </expand> 20 </requirements>
14 <required_files> 21 <required_files>
15 <include type="literal" path="test-data/champbloc_ivr.csv"/> 22 <include type="literal" path="test-data/champbloc_ivr.csv"/>
16 <include type="literal" path="test-data/ficheterrain.csv"/> 23 <include type="literal" path="test-data/ficheterrain.csv"/>
17 <include type="literal" path="CB_ivr.tif"/> 24 <include type="literal" path="CB_ivr.tif"/>
18 <include type="literal" path="logo_merged.png"/> 25 <include type="literal" path="logo_merged.png"/>
19 <include type="literal" path="cb_ivr_site_report_col_scale_loop.Rmd"/> 26 <include type="literal" path="cb_ivr_site_report_col_scale_loop.Rmd"/>
20 <include type="literal" path="loop_col_scale.r"/> 27 <include type="literal" path="loop_col_scale.r"/>
21 <include type="literal" path="cb_ivr.r"/> 28 <include type="literal" path="cb_ivr.r"/>
22 </required_files> 29 </required_files>
23 <command detect_errors="exit_code"><![CDATA[ 30 <command detect_errors="exit_code"><![CDATA[
31 cp '$__tool_directory__/cb_ivr_site_report_col_scale_loop.Rmd' ./cb_ivr_site_report_col_scale_loop.Rmd &&
24 Rscript 32 Rscript
25 '$__tool_directory__/cb_ivr.r' 33 '$__tool_directory__/cb_ivr.r'
26 '$fiche_val' 34 '$fiche_val'
27 '$input_data' 35 '$input_data'
28 '$__tool_directory__/cb_ivr_site_report_col_scale_loop.Rmd' 36 ./cb_ivr_site_report_col_scale_loop.Rmd
29 '$__tool_directory__/loop_col_scale.r' 37 '$__tool_directory__/loop_col_scale.r'
30 '$output_ivr' 38 '$output_ivr'
31 '$plots' 39 '$plots'
32 '$output_report' 40 '$output_report'
33 ]]> 41 ]]>