# HG changeset patch
# User ecology
# Date 1628878658 0
# Node ID fb7b2cbd80bb6db541c21cdb3155667a08b4525b

"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 60627aba07951226c8fd6bb3115be4bd118edd4e"

diff -r 000000000000 -r fb7b2cbd80bb LICENSE.md
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/LICENSE.md	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
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+PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff -r 000000000000 -r fb7b2cbd80bb funct_anomy.r
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/funct_anomy.r	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,39 @@
+#Rscript
+
+###########################
+##     Anonymization     ##
+###########################
+
+#####Packages : tangles
+
+#Load arguments
+
+args <- commandArgs(trailingOnly = TRUE)
+
+if (length(args) == 0) {
+    stop("This tool needs at least one argument")
+}else{
+    table <- args[1]
+    hr <- args[2]
+    latitude <- as.numeric(args[3])
+    longitude <- as.numeric(args[4])
+}
+
+if (hr == "false") {
+  hr <- FALSE
+}else{
+  hr <- TRUE
+}
+
+#####Import data
+data <- read.table(table, sep = "\t", dec = ".", header = hr, fill = TRUE, encoding = "UTF-8")
+
+randomized_data <- tangles::tangles(data = as.matrix(data[, c(latitude, longitude)]), depth = 3, rasterdata = FALSE, raster_object = FALSE, saveTangles = FALSE, path = NULL)
+ 
+data[, c(latitude, longitude)] <- NULL
+
+tab_anon <- data.frame(longitude = randomized_data[[1]]$X, latitude = randomized_data[[1]]$Y)
+
+tab_anon <- cbind(data, tab_anon)
+
+write.table(tab_anon, "anonym_data.tabular", row.names = FALSE, quote = FALSE, sep = "\t", dec = ".", fileEncoding = "UTF-8")
diff -r 000000000000 -r fb7b2cbd80bb functions.r
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/functions.r	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,22 @@
+#Rscript
+
+#########################################################################################
+####################### Exploration data tools function #################################
+#########################################################################################
+#### Based on Romain Lorrillière R script
+#### Modified by Alan Amosse, Benjamin Yguel and Marie Jossé for integrating within Galaxy-E
+
+######################################### start of the function makeTableAnalyse
+##Species are placed in separated columns and addition of zero on plots where at least one selected species is present
+make_table_analyse <- function(data, var, spe, var2, var3) {
+    tab <- reshape(data
+                  , v.names = var
+                  , idvar = c(var2, var3)
+                  , timevar = spe
+                  , direction = "wide")
+    tab[is.na(tab)] <- 0 ###### remplace les na par des 0 / replace NAs by 0
+
+    colnames(tab) <- sub(paste0(var, "."), "", colnames(tab))### remplace le premier pattern "abond." par le second "" / replace the column names "abond." by ""
+    return(tab)
+}
+######################################### end of the function makeTableAnalyse
diff -r 000000000000 -r fb7b2cbd80bb graph_homogeneity_normality.r
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/graph_homogeneity_normality.r	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,130 @@
+#Rscript
+
+#######################################
+##     Homogeneity and normality     ##
+#######################################
+
+#####Packages : car
+#               ggplot2
+#               ggpubr
+#               Cowplot
+
+#####Load arguments
+
+args <- commandArgs(trailingOnly = TRUE)
+
+if (length(args) == 0) {
+    stop("This tool needs at least one argument")
+}else{
+    table <- args[1]
+    hr <- args[2]
+    date <- as.numeric(args[3])
+    spe <- as.numeric(args[4])
+    var <- as.numeric(args[5])
+}
+
+if (hr == "false") {
+  hr <- FALSE
+}else{
+  hr <- TRUE
+}
+
+#####Import data
+data <- read.table(table, sep = "\t", dec = ".", header = hr, fill = TRUE, encoding = "UTF-8")
+data <- na.omit(data)
+coldate <- colnames(data)[date]
+colspe <- colnames(data)[spe]
+colvar <- colnames(data)[var]
+
+#####Your analysis
+
+####Homogeneity of the variance####
+
+##Test of Levene##
+testlevene <- function(data, col1, col2) {
+        data[, col1] <- as.numeric(data[, col1])
+        data[, col2] <- as.factor(data[, col2])
+    tb_levene <- car::leveneTest(y = data[, col1], group = data[, col2])
+
+    return(tb_levene)
+    }
+levene <- capture.output(testlevene(data = data, col1 = colvar, col2 = colspe))
+
+cat("\nwrite table with levene test. \n--> \"", paste(levene, "\"\n", sep = ""), file = "levene.txt", sep = "", append = TRUE)
+
+##Two boxplots to visualize it##
+
+homog_var <- function(data, col1, col2, col3, mult) {
+    data[, col1] <- as.factor(data[, col1])
+    if (mult) {
+            for (spe in unique(data[, col2])) {
+             data_cut <- data[data[, col2] == spe, ]
+             graph_2 <- ggplot2::ggplot(data_cut, ggplot2::aes_string(x = col1, y = col3, color = col1)) +
+             ggplot2::geom_boxplot() +
+             ggplot2::theme(legend.position = "none", axis.text.x = ggplot2::element_text(angle = 90, vjust = 0.5, hjust = 1), panel.background = ggplot2::element_rect(fill = "#d9d4c5", colour = "#d9d4c5", linetype = "solid"),
+              panel.grid.major = ggplot2::element_line(linetype = "solid", colour = "white"),
+              panel.grid.minor = ggplot2::element_line(linetype = "solid", colour = "white"))
+
+            ggplot2::ggsave(paste("Homogeneity_of_", spe, ".png"), graph_2, width = 16, height = 9, units = "cm")
+            }
+        }else{
+        graph_1 <- ggplot2::ggplot(data, ggplot2::aes_string(x = col1, y = col3, color = col1)) +
+          ggplot2::geom_boxplot() +
+          ggplot2::theme(legend.position = "none", axis.text.x = ggplot2::element_text(angle = 90, vjust = 0.5, hjust = 1))
+
+    #Put multiple panels
+    graph_2 <- graph_1 + ggplot2::facet_grid(rows = ggplot2::vars(data[, col2]), scales = "free") +
+      ggplot2::theme(panel.background = ggplot2::element_rect(fill = "#d9d4c5", colour = "#d9d4c5", linetype = "solid"),
+          panel.grid.major = ggplot2::element_line(linetype = "solid", colour = "white"),
+          panel.grid.minor = ggplot2::element_line(linetype = "solid", colour = "white"))
+
+    ggplot2::ggsave("Homogeneity.png", graph_2, width = 16, height = 9, units = "cm")
+        }
+}
+
+####Normality of the distribution####
+# Kolmogorov-Smirnov test
+
+ks <- capture.output(ks.test(x = data[, var], y = "pnorm", alternative = "two.sided"))
+
+cat("\nwrite table with Kolmogorov-Smirnov test. \n--> \"", paste(ks, "\"\n", sep = ""), file = "ks.txt", sep = "", append = TRUE)
+
+#Histogramm with distribution line
+graph_hist <- function(data, var1) {
+  graph_hist <- ggplot2::ggplot(data) +
+  ggplot2::geom_histogram(ggplot2::aes_string(x = var1), binwidth = 2, color = "black", fill = "white") +
+  ggplot2::geom_density(ggplot2::aes_string(var1), alpha = 0.12, fill = "red") +
+  ggplot2::ggtitle("Distribution histogram")
+
+return(graph_hist)
+}
+
+#Add the mean dashed line
+add_mean <- function(graph, var1) {
+  graph_mean <- graph + ggplot2::geom_vline(xintercept = mean(data[, var1]),
+              color = "midnightblue", linetype = "dashed", size = 1)
+
+return(graph_mean)
+}
+
+#Adding a QQplot
+graph_qqplot <- function(data, var1) {
+  graph2 <- ggpubr::ggqqplot(data, var1, color = "midnightblue") + ggplot2::ggtitle("Q-Q plot")
+
+return(graph2)
+}
+
+#On suppose que les données sont distribuées normalement lorsque les points suivent approximativement la ligne de référence à 45 degrés.
+
+graph_fin <- function(graph1, graph2) {
+  graph <- cowplot::plot_grid(graph1, graph2, ncol = 2, nrow = 1)
+
+  ggplot2::ggsave("Normal_distribution.png", graph, width = 10, height = 7, units = "cm")
+}
+
+mult <- ifelse(length(unique(data[, colspe])) == 2, FALSE, TRUE)
+homog_var(data, col1 = coldate, col2 = colspe, col3 = colvar, mult = mult)
+
+graph_hist1 <- graph_hist(data, var1 = colvar)
+graph_mean <- add_mean(graph = graph_hist1, var1 = colvar)
+graph_fin(graph1 = graph_mean, graph2 = graph_qqplot(data, var1 = colvar))
diff -r 000000000000 -r fb7b2cbd80bb graph_lcbd.r
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/graph_lcbd.r	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,225 @@
+#Rscript
+
+#########################
+##    Beta diversity   ##
+#########################
+
+#####Packages : ggplot2
+#               vegan
+#               adespatial
+#               dplyr
+#               tibble
+#               tdyr
+
+#####Load arguments
+
+args <- commandArgs(trailingOnly = TRUE)
+
+if (length(args) < 2) {
+    stop("This tool needs at least 2 arguments")
+}else{
+    table <- args[1]
+    hr <- args[2]
+    abund <- as.numeric(args[3])
+    loc <- as.numeric(args[4])
+    spe <- as.numeric(args[5])
+    date <- as.numeric(args[6])
+    map <- as.logical(args[7])
+    sepa <- as.logical(args[8])
+    not <- as.logical(args[9])
+    lat <- as.numeric(args[10])
+    long <- as.numeric(args[11])
+    var <- as.numeric(args[12])
+    source(args[13])
+}
+
+if (hr == "false") {
+  hr <- FALSE
+}else{
+  hr <- TRUE
+}
+
+#####Import data
+data <- read.table(table, sep = "\t", dec = ".", header = hr, fill = TRUE, encoding = "UTF-8")
+colabund <- colnames(data)[abund]
+colloc <- colnames(data)[loc]
+if (map) {
+  collat <- colnames(data)[lat]
+  collong <- colnames(data)[long]
+}
+colspe <- colnames(data)[spe]
+coldate <- colnames(data)[date]
+data[, coldate] <- as.factor(data[, coldate])
+
+data <- data[grep("^$", data[, spe], invert = TRUE), ]
+
+if (sepa) {
+colvar <- colnames(data)[var]
+}
+
+# Data for species
+data_num <- make_table_analyse(data, colabund, colspe, colloc, coldate)
+nb_spe <- length(unique(data[, spe]))
+nb_col <- ncol(data_num) - nb_spe + 1
+
+#Data with coordinates and environmental
+if (map) {
+  data_xy <- data_num[, c(collat, collong)]
+  colnames(data_xy) <- c("latitude", "longitude")
+  # Data for environment
+  data_env <- data_num[, c(colloc, collat, collong)]
+  colnames(data_env) <- c("site", "latitude", "longitude")
+}
+
+# Data with only species and their abundance
+data_spe <- data_num[, nb_col:ncol(data_num)]
+rownames(data_spe) <- paste0(data_num[, colloc], " - ", data_num[, coldate])
+
+#####Your analysis
+
+# Computation beta.div {adespatial}
+# Beta.div on Hellinger-transformed species data
+data_beta <- adespatial::beta.div(data_spe, method = "hellinger", nperm = 9999)
+
+save(data_beta, file = "beta_diversity.Rdata")
+cat("##############################################################################",
+    "\n########################### Beta Diversity Summary ###########################",
+    "\n##############################################################################",
+    "\n\n### All data ###",
+    "\nBeta diversity: ", data_beta$beta[[2]],
+    "\nSum of Squares: ", data_beta$beta[[1]],
+    "\n\n### Vector of Local Contributions to Beta Diversity (LCBD) for the sites each date ###",
+    "\n", capture.output(data_beta$LCBD),
+    "\n\n### Vector of P-values associated with the LCBD indices ###",
+    "\n", capture.output(data_beta$p.LCBD),
+    "\n\n### Vector of Corrected P-values for the LCBD indices, Holm correction ###",
+    "\n", capture.output(data_beta$p.adj),
+    "\n\n### Vector of Species contributions to beta diversity (SCBD) ###",
+    "\n", capture.output(data_beta$SCBD), file = "LCBD.txt", fill = 1, append = TRUE)
+
+# Which species have a SCBD larger than the mean SCBD?
+scbd <- capture.output(data_beta$SCBD[data_beta$SCBD >= mean(data_beta$SCBD)])
+write(scbd, "SCBD.txt")
+
+##1st fonction
+beta_div_ext <- function(data_beta, data_xy, data_env) {
+   data_beta_ext <- data.frame(data_xy, data_env, LCBD = data_beta$LCBD * 100, p.LCBD = data_beta$p.LCBD, signif = data_beta$p.LCBD < 0.05)
+
+  graph_beta_ext <- ggplot2::ggplot(data = data_beta_ext, ggplot2::aes(x = latitude, y = longitude, size = LCBD, col = signif)) +
+  ggplot2::geom_point() +
+  ggplot2::scale_colour_manual(values = c("#57bce0", "#ce0b0b"), labels = c("Non significant", "Significant"), name = "Significance at 0.05") +
+  ggplot2::xlab("Longitude") + ggplot2::ylab("Latitude")
+
+  ggplot2::ggsave("Beta_diversity_through_space.png", graph_beta_ext)
+}
+
+## Boyé et al. 2017 JSR Fig R
+####################################################
+
+####LCBD####
+lcbd_site <- adespatial::beta.div(data_spe, "hellinger", nperm = 999)
+
+compute_lcbd <- function(data_beta, data_spe, data_num) {
+
+#############
+  mat_lcbd_site <- data.frame(data_spe, LCBD = data_beta$LCBD * 100, p.LCBD = data_beta$p.LCBD, signif = data_beta$p.LCBD < 0.05, site = data_num[, colloc], date = data_num[, coldate])
+
+## Map spatio-temp
+##################
+  p1 <- ggplot2::qplot(date, site, size = LCBD, col = signif, data = mat_lcbd_site)
+  p1 <- p1 + ggplot2::scale_colour_manual(values = c("#57bce0", "#ce0b0b"), labels = c("Non significant", "Significant"), name = "Significance at 0.05")
+  p1 <- p1 + ggplot2::theme_bw() + ggplot2::theme(axis.text.x = ggplot2::element_text(angle = 90)) + ggplot2::xlab("Date") + ggplot2::ylab("Site")
+
+  ggplot2::ggsave("LCBD_sites_time.png", p1)
+
+
+## Par années
+#############
+  mean_time <- tapply(mat_lcbd_site$LCBD, mat_lcbd_site$date, mean)
+  sd_time <- tapply(mat_lcbd_site$LCBD, mat_lcbd_site$date, sd)
+  date <- unique(mat_lcbd_site$date)
+
+  data <- data.frame(date, mean_time, sd_time)
+
+  time <- ggplot2::ggplot() + ggplot2::geom_pointrange(ggplot2::aes(x = date, y = mean_time, ymin = mean_time - sd_time, ymax = mean_time + sd_time), data = data)
+  time <- time + ggplot2::theme(axis.text.x = ggplot2::element_text(angle = 90), axis.line.y = ggplot2::element_line(size = 0.5)) + ggplot2::ylab("mean LCBD")
+
+  ggplot2::ggsave("Mean_LCBD_through_time.png", time)
+}
+
+## Choose another graph
+#######################
+compute_lcbd2 <- function(data_beta, data_spe, data_num) {
+
+#############
+  mat_lcbd_site <- data.frame(data_spe, LCBD = data_beta$LCBD * 100, p.LCBD = data_beta$p.LCBD, signif = data_beta$p.LCBD < 0.05, site = data_num[, colloc], date = data_num[, coldate], variable = data_num[, colvar])
+
+  p1 <- ggplot2::qplot(date, variable, size = LCBD, col = signif, data = mat_lcbd_site)
+  p1 <- p1 + ggplot2::scale_colour_manual(values = c("#57bce0", "#ce0b0b"), labels = c("Non significant", "Significant"), name = "Significance at 0.05")
+  p1 <- p1 + ggplot2::theme_bw() + ggplot2::theme(axis.text.x = ggplot2::element_text(angle = 90)) + ggplot2::xlab("Date") + ggplot2::ylab(colvar)
+
+  ggplot2::ggsave(paste0("LCBD_per_", colvar, "_through_time.png"), p1)
+}
+
+####SCBD###
+# Function to compute SCBD
+library(dplyr)
+make_scbd_uvc <- function(data_spe, z, data_beta) {
+  # Computation using beta.div {adespatial} on
+  # Hellinger-transformed species data
+
+  # Which species have a SCBD larger than the mean SCBD?
+  spe_scbd <-  data_beta$SCBD[data_beta$SCBD >= mean(data_beta$SCBD)] %>%
+    as.data.frame() %>%
+    tibble::rownames_to_column(var = "Taxon") %>%
+    dplyr::mutate("Methode" = z)
+
+  return(spe_scbd)
+}
+
+# Function to make a radar plot
+
+coord_radar <- function(theta = "x", start = 0, direction = 1) {
+  theta <- match.arg(theta, c("x", "y"))
+  r <- if (theta == "x") "y" else "x"
+  ggplot2::ggproto("CordRadar", ggplot2::coord_polar(theta = theta, start = start,
+          direction = sign(direction)),
+          is_linear = function(coord) TRUE)
+}
+
+# Make the radar plot
+radar_plot <- function(scbd_uvc_tc) {
+  uvc_rd_plot_data <- scbd_uvc_tc %>%
+    rename(scbd_score = ".")
+
+  rad_uvc <- ggplot2::ggplot(uvc_rd_plot_data, ggplot2::aes(x = Taxon, y = scbd_score, group = Methode)) +
+    ggplot2::geom_line() +
+    ggplot2::geom_point(size = 3) +
+    coord_radar() +
+    ggplot2::theme_bw() +
+    ggplot2::theme(axis.text.x = ggplot2::element_text(size = 10),
+        legend.position = "bottom")
+
+  ggplot2::ggsave("SCBD_Species_Radar_plot.png", rad_uvc)
+}
+
+## LCBD
+
+if (map) {
+  #Beta diversity
+  beta_div_ext(data_beta, data_xy, data_env)
+}
+
+#Lcbd per places and time
+compute_lcbd(data_beta, data_spe, data_num)
+
+#Lcbd of your choice
+if (sepa) {
+  compute_lcbd2(data_beta, data_spe, data_num)
+}
+
+##SCBD
+
+scbd_uvc_tc <- make_scbd_uvc(data_spe, z = "TC", data_beta)
+
+radar_plot(scbd_uvc_tc)
diff -r 000000000000 -r fb7b2cbd80bb graph_link_var.r
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/graph_link_var.r	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,296 @@
+#Rscript
+
+################################################
+##    Link between variables and themselves   ##
+################################################
+
+#####Packages : ggplot2
+#               Cowplot
+#               Car
+#               faraway
+#               dplyr
+#               GGally
+#               FactoMiner
+#               factoextra
+#               ggcorrplot
+
+#####Load arguments
+
+args <- commandArgs(trailingOnly = TRUE)
+
+if (length(args) == 0) {
+    stop("This tool needs at least one argument")
+}else{
+    table <- args[1]
+    hr <- args[2]
+    colli <- as.logical(args[3])
+    vif <- as.logical(args[4])
+    pca <- as.logical(args[5])
+    interr <- as.logical(args[6])
+    auto <- as.logical(args[7])
+    spe <- as.numeric(args[8])
+    col <- as.numeric(strsplit(args[9], ",")[[1]])
+    var <- as.numeric(args[10])
+    var2 <- as.numeric(args[11])
+    var4 <- as.numeric(args[12])
+}
+
+if (hr == "false") {
+  hr <- FALSE
+}else{
+  hr <- TRUE
+}
+
+if (length(col) == 1) {
+stop("Please select two or more numerical columns")
+}
+
+#####Import data
+data <- read.table(table, sep = "\t", dec = ".", header = hr, fill = TRUE, encoding = "UTF-8")
+if (vif | pca) {
+data_active <- data[col]
+#Define the active individuals and the active variables for the PCA
+}
+
+if (colli | interr) {
+colspe <- colnames(data)[spe]
+}
+
+if (colli) {
+data_num <- data[col]
+data_num$species <- data[, spe]
+data_num <- data_num[grep("^$", data_num$spe, invert = TRUE), ]
+}
+
+if (interr | auto) {
+colvar <- colnames(data)[var]
+}
+
+if (interr) {
+colvar2 <- colnames(data)[var2]
+colvar4 <- colnames(data)[var4]
+}
+
+#####Your analysis
+
+####Independence of the observations####
+
+acf_tb <- function(data, var) {
+obj <- acf(data[, var], na.action = na.pass)
+  return(obj)
+}
+
+acf_df <- function(data, var) {
+
+tb <- data.frame(acf = acf_tb(data, var)$acf, lag = acf_tb(data, var)$lag)
+
+  return(tb) # Lag: intervalle temporel entre mesures, fréquence à laquelle on mesure l'auto corrélation.
+# ACF: indépendance temporelle
+}
+
+autocorr <- function(var1, var2) {
+  cat("\nACF\n", var2$acf, file = "acf.txt", fill = 1, append = TRUE)
+  graph <- ggplot2::ggplot() +
+  ggplot2::geom_bar(ggplot2::aes(x = var2$lag, y = var2$acf), stat = "identity", position = "identity", fill = "midnightblue") +
+  ggplot2::geom_hline(mapping = ggplot2::aes(yintercept = qnorm((1 + 0.95) / 2) / sqrt(var1$n.used)),
+             linetype = "dashed") + # calcul interval de confiance à 95% sans correction du bruit blanc.
+  ggplot2::geom_hline(mapping = ggplot2::aes(yintercept = -qnorm((1 + 0.95) / 2) / sqrt(var1$n.used)), linetype = "dashed") + ggplot2::labs(title = "Autocorrelation") + ggplot2::xlab("lag") + ggplot2::ylab("acf")
+  ggplot2::theme(plot.title = ggplot2::element_text(hjust = 0.5))
+
+  ggplot2::ggsave("autocorrelation.png", graph)
+}
+
+####Interractions####
+
+graph <- function(data, var1, var2, var3) {
+  graph <- ggplot2::ggplot(data, ggplot2::aes_string(x = var1, y = var2, group = var3, color = var3)) +
+  ggplot2::geom_point() +
+  ggplot2::geom_smooth(method = lm, se = FALSE) +
+  ggplot2::theme(plot.title = ggplot2::element_text(color = "black", size = 12, face = "bold"))
+
+return(graph)
+}
+
+# Put multiple panels
+interraction <- function(data, var1, var2, var3, var4) {
+  cat("\nSpecies\n", spe, file = "Species.txt", fill = 1, append = TRUE)
+  if (mult1) {
+      for (spe in unique(data[, var3])) {
+      data_cut <- data[data[, var3] == spe, ]
+      mult_graph <- graph(data_cut, var1, var2, var3) + ggplot2::facet_grid(cols = ggplot2::vars(data_cut[, var4]), scales = "free") +
+      cowplot::background_grid(major = "xy", minor = "none") +
+      cowplot::panel_border() + ggplot2::ggtitle("Interactions")
+
+      ggplot2::ggsave(paste("interaction_of_", spe, ".png"), mult_graph, width = 10, height = 7)
+      }
+    }else{
+    mult_graph <- graph(data, var1, var2, var3) + ggplot2::facet_grid(rows = ggplot2::vars(data[, var3]), cols = ggplot2::vars(data[, var4]), scales = "free") +
+    cowplot::background_grid(major = "xy", minor = "none") +
+    cowplot::panel_border() + ggplot2::ggtitle("Interactions")
+
+    ggplot2::ggsave("interraction.png", mult_graph)
+  }
+}
+
+####Collinearity among covariates####
+# Create the plots
+
+coli <- function(data, var) {
+  if (mult2) {
+    cat("\nThere is not enough data on these species they appear too few times in the tabular-file\n", file = "Data.txt", fill = 1, append = TRUE)
+    for (spe in unique(data$species)) {
+      nb_spe <- sum(data$species == spe)
+      if (nb_spe <= 2) {
+      cat(spe, file = "Data.txt", fill = 1, append = TRUE)
+      }else{
+      data_cut <- data[data$species == spe, ]
+      nb <- ncol(data_cut)
+      data_num <- data_cut[, -nb]
+      graph <- GGally::ggpairs(data_num, ggplot2::aes(color = data_cut$species),
+      lower = list(continuous = "points"), axisLabels = "internal")
+
+      ggplot2::ggsave(paste0("collinarity_of_", spe, ".png"), graph, width = 20, height = 15)
+      }
+  }
+
+  }else{
+    nb <- ncol(data)
+    data_cut <- data[, -nb]
+    graph <- GGally::ggpairs(data_cut, ggplot2::aes(color = data[, var]),
+    lower = list(continuous = "points"), axisLabels = "internal") +
+  ggplot2::scale_colour_manual(values = c("#00AFBB", "#E7B800", "#FC4E07")) +
+  ggplot2::scale_fill_manual(values = c("#00AFBB", "#E7B800", "#FC4E07"))
+
+  ggplot2::ggsave("collinarity.png", graph)
+  }
+}
+
+####PCA method####
+
+plot_pca <- function(data) {
+  #Correlation circle
+  graph_corr <- factoextra::fviz_pca_var(active_data(data), col.var = "cos2",
+                           gradient.cols = c("#00AFBB", "#E7B800", "#FC4E07"),
+                           repel = TRUE #Avoid text overlap
+                           )
+  ggplot2::ggsave("Pca_circle.png", graph_corr)
+}
+
+plot_qual <- function(data) {
+  #PCA results for variables
+  var <- factoextra::get_pca_var(active_data(data))
+
+  #representation quality
+  graph_quality <- ggcorrplot::ggcorrplot(var$cos2[!apply(var$cos2, 1, anyNA), ], method = "circle",
+  ggtheme = ggplot2::theme_gray,
+  colors = c("#00AFBB", "#E7B800", "#FC4E07"))
+
+  ggplot2::ggsave("Pca_quality.png", graph_quality)
+}
+
+#### Variance inflation factor ####
+
+myvif <- function(mod) {
+  v <- vcov(mod)
+  assign <- attributes(model.matrix(mod))$assign
+  if (names(coefficients(mod)[1]) == "(Intercept)") {
+    v <- v[-1, -1]
+    assign <- assign[-1]
+  } else warning("No intercept: vifs may not be sensible.")
+  terms <- labels(terms(mod))
+  n_terms <- length(terms)
+  if (n_terms < 2) stop("The model contains fewer than 2 terms")
+  if (length(assign) > dim(v)[1]) {
+     diag(tmp_cor) <- 0
+     if (any(tmp_cor == 1.0)) {
+        return("Sample size is too small, 100% collinearity is present")
+     } else {
+        return("Sample size is too small")
+     }
+  }
+  r <- cov2cor(v)
+  detr <- det(r)
+  result <- matrix(0, n_terms, 3)
+  rownames(result) <- terms
+  colnames(result) <- c("GVIF", "Df", "GVIF^(1/2Df)")
+  for (term in 1:n_terms) {
+    subs <- which(assign == term)
+    result[term, 1] <- det(as.matrix(r[subs, subs])) * det(as.matrix(r[-subs, -subs])) / detr
+    result[term, 2] <- length(subs)
+  }
+  if (all(result[, 2] == 1)) {
+    result <- data.frame(GVIF = result[, 1])
+  } else {
+    result[, 3] <- result[, 1] ^ (1 / (2 * result[, 2]))
+  }
+  invisible(result)
+}
+corvif1 <- function(dataz) {
+    dataz <- as.data.frame(dataz)
+    #correlation part
+    tmp_cor <- cor(dataz, use = "complete.obs")
+    return(tmp_cor)
+}
+corvif2 <- function(dataz) {
+    dataz <- as.data.frame(dataz)
+    #vif part
+    form    <- formula(paste("fooy ~ ", paste(strsplit(names(dataz), " "), collapse = " + ")))
+    dataz   <- data.frame(fooy = 1, dataz)
+    lm_mod  <- lm(form, dataz)
+
+    return(myvif(lm_mod))
+}
+
+#Autocorrelation
+if (auto) {
+obj1 <- acf_tb(data, var = colvar)
+obj2 <- acf_df(data, var = colvar)
+autocorr(var1 = obj1, var2 = obj2)
+}
+
+if (interr) {
+#Interractions
+mult1 <- ifelse(length(unique(data[, colspe])) <= 6, FALSE, TRUE)
+interraction(data, var1 = colvar, var2 = colvar2, var3 = colspe, var4 = colvar4)
+}
+
+#Collinearity
+if (colli) {
+mult2 <- ifelse(length(unique(data[, spe])) < 3, FALSE, TRUE)
+coli(data = data_num, var = spe)
+}
+
+#PCA
+if (pca) {
+active_data <- function(data) {
+  #Calcul of PCA for the active data
+  res_pca <- FactoMineR::PCA(data, graph = FALSE)
+
+return(res_pca)
+}
+
+#eigenvalue
+eig_val <- capture.output(factoextra::get_eigenvalue(active_data(data_active)))
+
+cat("\nwrite table with eigenvalue. \n--> \"", paste(eig_val, "\"\n", sep = ""), file = "valeurs.txt", sep = "", append = TRUE)
+
+plot_pca(data_active)
+plot_qual(data_active)
+}
+
+#VIF
+if (vif) {
+#Compute 2 tables#
+tb_corr <- as.data.frame(corvif1(dataz = data_active))
+tb_corr <- cbind(x = rownames(tb_corr), tb_corr)
+tb_vif <- corvif2(dataz = data_active)
+
+write.table(tb_corr, "corr.tabular", row.names = FALSE, quote = FALSE, sep = "\t", dec = ".", fileEncoding = "UTF-8")
+
+if (all(is.na(tb_vif))) {
+  tb_vif <- NULL
+  cat("Vif couldn't be calculated, selected data isn't correlated")
+}else{
+write.table(tb_vif, "vif.tabular", row.names = FALSE, quote = FALSE, sep = "\t", dec = ".", fileEncoding = "UTF-8")
+}
+}
diff -r 000000000000 -r fb7b2cbd80bb graph_pres_abs_abund.r
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/graph_pres_abs_abund.r	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,195 @@
+#Rscript
+
+#########################################################
+##    Presence abscence and abundance in environment   ##
+#########################################################
+
+#####Packages : ggplot2
+#               vegan
+
+#####Load arguments
+
+args <- commandArgs(trailingOnly = TRUE)
+
+if (length(args) < 5) {
+    stop("This tool needs at least 5 arguments")
+}else{
+    table <- args[1]
+    hr <- args[2]
+    abundance <- as.logical(args[3])
+    presabs <- as.logical(args[4])
+    rarefaction <- as.logical(args[5])
+    lat <- as.numeric(args[6])
+    long <- as.numeric(args[7])
+    ind <- as.character(args[8])
+    loc <- as.numeric(args[9])
+    num <- as.character(args[10])
+    spe <- as.numeric(args[11])
+    abond <- as.numeric(args[12])
+}
+
+if (hr == "false") {
+  hr <- FALSE
+}else{
+  hr <- TRUE
+}
+
+#####Import data
+data <- read.table(table, sep = "\t", dec = ".", header = hr, fill = TRUE, encoding = "UTF-8")
+
+if (abundance) {
+collat <- colnames(data)[lat]
+collong <- colnames(data)[long]
+}
+
+if (presabs) {
+colloc <- colnames(data)[loc]
+}
+
+if (presabs | rarefaction | abundance) {
+colabond <- colnames(data)[abond]
+colspe <- colnames(data)[spe]
+data <- data[grep("^$", data[, colspe], invert = TRUE), ]
+}
+
+#####Your analysis
+
+####The abundance in the environment####
+
+##Representation of the environment##
+
+## Mapping
+graph_map <- function(data, collong, collat, colabond, ind, colspe) {
+  cat("\nCoordinates range\n\nLatitude from ", min(data[, collat], na.rm = TRUE), " to ", max(data[, collat], na.rm = TRUE), "\nLongitude from ", min(data[, collong], na.rm = TRUE), " to ", max(data[, collong], na.rm = TRUE), file = "Data_abund.txt", fill = 1, append = TRUE)
+  if (mult0) {
+    mappy <- ggplot2::ggplot(data, ggplot2::aes_string(x = collong, y = collat, cex = colabond, color = colspe)) +
+    ggplot2::geom_point() + ggplot2::ggtitle(paste("Abundance of", ind, "in the environment")) + ggplot2::xlab("Longitude") + ggplot2::ylab("Latitude")  + ggplot2::theme(axis.text.x = ggplot2::element_text(angle = 90, vjust = 0.5, hjust = 1), legend.text = ggplot2::element_text(size = 8)) + ggplot2::guides(cex = ggplot2::guide_legend(reverse = TRUE))
+
+  }else{
+    mappy <- ggplot2::ggplot(data, ggplot2::aes_string(x = collong, y = collat, cex = colabond, color = colabond)) +
+    ggplot2::geom_point() + ggplot2::ggtitle(paste("Abundance of", ind, "in the environment")) + ggplot2::xlab("Longitude") + ggplot2::ylab("Latitude")  + ggplot2::theme(axis.text.x = ggplot2::element_text(angle = 90, vjust = 0.5, hjust = 1), legend.text = ggplot2::element_text(size = 8)) + ggplot2::guides(cex = ggplot2::guide_legend(reverse = TRUE))
+  }
+  ggplot2::ggsave("mappy.png", mappy, width = 20, height = 9, units = "cm")
+}
+
+####Presence absence abundance####
+
+## Histogram
+graph_hist <- function(data, col1, col2, col3) {
+  cat("\nLocations\n", unique(data[, col1]), file = "Locations.txt", fill = 1, append = TRUE)
+  if (mult1) {
+    for (loc in unique(data[, col1])) {
+      data_cut <- data[data[, col1] == loc, ]
+      data_cut <- data_cut[data_cut[, col3] > 0, ]
+      if (length(unique(data_cut[, col2])) <= 40) {
+        top <- nrow(data_cut)
+        var <- nchar(as.character(round(top * 0.1, digits = 0)))
+        step <- round(top * 0.1, digits = ifelse(var == 1, 1, -var + 1))
+        graph <- ggplot2::ggplot(data_cut) +
+        ggplot2::geom_bar(ggplot2::aes_string(x = col1, fill = col2)) +
+        ggplot2::scale_y_continuous(breaks = seq(from = 0, to = top, by = step)) +
+        ggplot2::theme(plot.title = ggplot2::element_text(color = "black", size = 12, face = "bold")) +
+        ggplot2::ggtitle("Number of presence")
+
+        ggplot2::ggsave(paste("number_in_", loc, ".png"), graph)
+      }else{
+        cat(paste0("\n", loc, " had more than 40 species and plot isn't readable please select a higher taxon level or cut your data"))
+      }
+    }
+  }else{
+  top <- nrow(data)
+  var <- nchar(as.character(round(top * 0.1, digits = 0)))
+  step <- round(top * 0.1, digits = ifelse(var == 1, 1, -var + 1))
+  graph <- ggplot2::ggplot(data) +
+  ggplot2::geom_bar(ggplot2::aes_string(x = col1, fill = col2)) +
+  ggplot2::scale_y_continuous(breaks = seq(from = 0, to = top, by = step)) +
+  ggplot2::theme(plot.title = ggplot2::element_text(color = "black", size = 12, face = "bold")) +
+  ggplot2::ggtitle("Number of individuals")
+
+  ggplot2::ggsave("number.png", graph)
+  }
+}
+
+rare <- function(data, spe, abond, rare, num) {
+# Put the data in form
+  new_data <- as.data.frame(data[, spe])
+  colnames(new_data) <- c("Species")
+  new_data$total <- data[, abond]
+
+  new_data$rarefaction <- as.integer(rare)
+
+  end <- length(unique(new_data$Species))
+  out <- vegan::rarecurve(new_data[, 2:3], step = 10, sample = rarefy_sample, label = FALSE)
+  names(out) <- paste(unique(new_data$Species), sep = "")
+
+# Coerce data into "long" form.
+  protox <- mapply(FUN = function(x, y) {
+    mydf <- as.data.frame(x)
+    colnames(mydf) <- "value"
+    mydf$species <- y
+    mydf$subsample <- attr(x, "Subsample")
+    mydf <- na.omit(mydf)
+    mydf
+  }, x = out, y = as.list(names(out)), SIMPLIFY = FALSE)
+
+  xy <- do.call(rbind, protox)
+  rownames(xy) <- NULL  # pretty
+
+# Plot.
+
+  if (mult2) {
+    for (spe in unique(data[, spe])) {
+      xy_cut <- xy[xy$species == spe, ]
+      top <- max(xy_cut$subsample)
+      var <- nchar(as.character(round(top * 0.1, digits = 0)))
+      step <- round(top * 0.1, digits = ifelse(var == 1, 1, -var + 1))
+      courbe <- ggplot2::ggplot(xy_cut, ggplot2::aes(x = subsample, y = value)) +
+      ggplot2::theme_gray() +
+      ggplot2::geom_line(size = 1) +
+      ggplot2::scale_x_continuous(breaks = seq(from = 0, to = top, by = step)) +
+      ggplot2::xlab("Abundance") + ggplot2::ylab("Value") +
+      ggplot2::ggtitle("rarefaction curve")
+
+      ggplot2::ggsave(paste("rarefaction_of_", spe, ".png"), courbe)
+    }
+  }else{
+    top <- max(xy$subsample)
+    var <- nchar(as.character(round(top * 0.1, digits = 0)))
+    step <- round(top * 0.1, digits = ifelse(var == 1, 1, -var + 1))
+    courbe <- ggplot2::ggplot(xy, ggplot2::aes(x = subsample, y = value, color = species)) +
+    ggplot2::theme_gray() +
+    ggplot2::geom_line(size = 1) +
+    ggplot2::scale_x_continuous(breaks = seq(from = 0, to = top, by = step)) +
+    ggplot2::xlab("Subsample") + ggplot2::ylab("Value") +
+    ggplot2::ggtitle("rarefaction curves")
+
+    ggplot2::ggsave("rarefaction.png", courbe)
+  }
+}
+
+if (abundance) {
+#Maps
+mult0 <- ifelse(length(unique(data[, colspe])) > 10, FALSE, TRUE)
+graph_map(data, collong = collong, collat = collat, colabond = colabond, ind = ind, colspe = colspe)
+}
+
+if (presabs) {
+#Presence absence count
+mult1 <- ifelse(length(unique(data[, colloc])) <= 10, FALSE, TRUE)
+graph_hist(data, col1 = colloc, col2 = colspe, col3 = colabond)
+}
+
+if (rarefaction) {
+#rarefaction
+
+#### rarefaction indice ####
+rarefy_sample <- as.numeric(num)
+
+## Calcul de la rarefaction
+rarefaction <- vegan::rarefy(data[, abond], rarefy_sample)
+
+write.table(rarefaction, "rare.tabular")
+
+mult2 <- ifelse(length(unique(data[, colspe])) <= 30, FALSE, TRUE)
+rare(data, spe = colspe, abond = colabond, rare = rarefaction, num = rarefy_sample)
+}
diff -r 000000000000 -r fb7b2cbd80bb graph_stat_presence_abs.r
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/graph_stat_presence_abs.r	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,105 @@
+#Rscript
+
+################################
+##    Median and dispersion   ##
+################################
+
+#####Packages : Cowplot
+#               ggplot2
+
+#####Load arguments
+
+args <- commandArgs(trailingOnly = TRUE)
+
+if (length(args) == 0) {
+    stop("This tool needs at least one argument")
+}else{
+    table <- args[1]
+    hr <- args[2]
+    var <- as.numeric(args[3])
+    spe <- as.numeric(args[4])
+    loc <- as.numeric(args[5])
+    time <- as.numeric(args[6])
+    source(args[7])
+}
+
+if (hr == "false") {
+  hr <- FALSE
+}else{
+  hr <- TRUE
+}
+
+#####Import data
+data <- read.table(table, sep = "\t", dec = ".", header = hr, fill = TRUE, encoding = "UTF-8")
+data <- na.omit(data)
+colvar <- colnames(data)[var]
+colspe <- colnames(data)[spe]
+colloc <- colnames(data)[loc]
+coltime <- colnames(data)[time]
+
+data <- data[grep("^$", data[, spe], invert = TRUE), ]
+
+#####Your analysis
+
+####Median and data dispersion####
+
+#Median
+graph_median <- function(data, var) {
+  graph_median <- ggplot2::ggplot(data, ggplot2::aes_string(y = var)) +
+  ggplot2::geom_boxplot(color = "darkblue") +
+  ggplot2::theme(legend.position = "none") + ggplot2::ggtitle("Median")
+
+return(graph_median)
+
+}
+
+#Dispersion
+dispersion <- function(data, var, var2) {
+  graph_dispersion <- ggplot2::ggplot(data) +
+  ggplot2::geom_point(ggplot2::aes_string(x = var2, y = var, color = var2)) +
+  ggplot2::scale_fill_brewer(palette = "Set3") +
+  ggplot2::theme(legend.position = "none", axis.text.x = ggplot2::element_text(angle = 90, vjust = 0.5, hjust = 1), plot.title = ggplot2::element_text(color = "black", size = 12, face = "bold")) + ggplot2::ggtitle("Dispersion")
+
+return(graph_dispersion)
+
+}
+
+#The 2 graph
+med_disp <- function(med, disp) {
+  graph <- cowplot::plot_grid(med, disp, ncol = 1, nrow = 2, vjust = -5,  scales = "free")
+
+  ggplot2::ggsave("Med_Disp.png", graph, width = 12, height = 20, units = "cm")
+}
+
+
+#### Zero problem in data ####
+
+#Put data in form
+
+data_num <- make_table_analyse(data, colvar, colspe, colloc, coltime)
+nb_spe <- length(unique(data[, spe]))
+nb_col <- ncol(data_num) - nb_spe + 1
+data_num <- data_num[, nb_col:ncol(data_num)]
+
+#Presence of zeros in the data
+mat_corr <- function(data) {
+  cor(data)
+}
+p_mat <- function(data) {
+  ggcorrplot::cor_pmat(data)
+} # compute a matrix of correlation p-values
+
+graph_corr <- function(data_num) {
+  graph <- ggcorrplot::ggcorrplot(mat_corr(data_num), method = "circle", p.mat = p_mat(data_num), #barring the no significant coefficient
+  ggtheme = ggplot2::theme_gray, colors = c("#00AFBB", "#E7B800", "#FC4E07"))
+
+  ggplot2::ggsave("0_pb.png", graph)
+}
+
+##Med and disp
+med <- graph_median(data, var = colvar)
+disp <- dispersion(data, var = colvar, var2 = colspe)
+med_disp(med = med, disp = disp)
+
+##O problem
+graph_corr(data_num)
diff -r 000000000000 -r fb7b2cbd80bb lcbd.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lcbd.xml	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,168 @@
+<tool id="ecology_beta_diversity" name="Local Contributions to Beta Diversity (LCBD)" version="@VERSION@" profile="20.01">
+    <description>Computes a measure of beta diversity, SCBD and representations</description>
+    <macros>
+        <import>macro.xml</import>
+    </macros>
+    <requirements> 
+        <requirement type="package" version="3.3.3">r-ggplot2</requirement>
+        <requirement type="package" version="2.5_7">r-vegan</requirement>
+        <requirement type="package" version="0.3_14">r-adespatial</requirement>
+        <requirement type="package" version="3.1.3">r-tibble</requirement>
+        <requirement type="package" version="1.0.7">r-dplyr</requirement>
+        <requirement type="package" version="1.1.3">r-tidyr</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        Rscript
+        '$__tool_directory__/graph_lcbd.r'
+          '$input'
+          '$colnames'
+          '$abundance'
+          '$location'
+          '$species'
+          '$date'
+          #if $method.type == 'Graph':
+            'TRUE'
+            'FALSE'
+            'FALSE'
+            '$method.latitude'
+            '$method.longitude'
+            ''
+          #elif $method.type == 'Separation':
+            'FALSE'
+            'TRUE'
+            'FALSE'
+            ''
+            ''
+            '$method.variable'
+          #elif $method.type == 'Nothing':
+            'FALSE'
+            'FALSE'
+            'TRUE'
+            ''
+            ''
+            ''
+          #end if
+         '$__tool_directory__/functions.r'
+          '$output_lcbd'
+          '$output_scbd'
+          '$plots'
+           #if $rdata=='true'
+             '$output_beta'
+           #end if
+        ]]>
+        </command>
+        <inputs>
+            <expand macro="explo_input"/>
+            <param name="abundance" label="Select column with abundances" type="data_column" data_ref="input" numerical="true" multiple="false" use_header_names="true"/>
+            <param name="location" label="Select column with locations" type="data_column" data_ref="input" multiple="false" use_header_names="true"/>
+            <param name="species" label="Select column containing taxon" type="data_column" data_ref="input" multiple="false" use_header_names="true"/>
+            <param name="date" label="Select column containing dates" type="data_column" data_ref="input" multiple="false" use_header_names="true"/>
+            <param name="rdata" type="boolean" checked="yes" label="Beta diversity object as .Rdata output ?"/>
+            <conditional name="method">
+                <param name="type" type="select" label="Other LCBD : spatialized representation or xy plot.">
+                    <option value="Nothing">Don't want to do another graph</option>
+                    <option value="Graph">Spatialized representation</option>
+                    <option value="Separation">Separation to construct a new lcbd graph</option>
+                </param>
+                <when value="Graph">
+                    <param name="latitude" label="Select column containing latitudes in decimal degrees" type="data_column" numerical="true" data_ref="input" multiple="false" use_header_names="true"/>
+                    <param name="longitude" label="Select column containing longitudes in decimal degrees" type="data_column" numerical="true" data_ref="input" multiple="false" use_header_names="true"/>
+                </when>
+                <when value="Separation">
+                    <param name="variable" type="data_column" data_ref="input" label="Select a column to make another graph according to the separation of the variable you choose" use_header_names="true"/>
+                </when>
+                <when value="Nothing"/>
+            </conditional>
+        </inputs>
+        <outputs>
+            <data name="output_lcbd" from_work_dir="LCBD.txt" format="txt" label="LCBD"/>
+            <data name="output_scbd" from_work_dir="SCBD.txt" format="txt" label="Which species have a SCBD larger than the mean SCBD?"/>
+            <data name="output_beta" from_work_dir="beta_diversity.Rdata" format="Rdata" label="Beta diversity, LCDB, SCBD - R object">
+                <filter>rdata</filter>
+            </data>
+            <collection type="list" name="plots">
+                <discover_datasets pattern="(?P&lt;designation&gt;.+)\.png" visible="false" format="png"/>
+            </collection>
+        </outputs>
+        <tests>
+            <test>
+                <param name="input" value="Reel_life_survey_fish_modif.tabular"/>
+                <param name="colnames" value="true"/>
+                <param name="abundance" value="18"/>
+                <param name="location" value="20"/>
+                <param name="species" value="15"/>
+                <param name="date" value="11"/>
+                <param name="rdata" value="false"/>
+                <conditional name="method">
+                    <param name="type" value="Nothing"/>
+                </conditional>
+                <output name="output_lcbd">
+                    <assert_contents>
+                        <has_n_lines n="186"/>
+                    </assert_contents>
+                </output>
+                <output name="output_scbd" value="SCBD.txt"/>
+                <output_collection name="plots" type="list" count="3">
+                    <element name="LCBD_sites_time" ftype="png">
+                        <assert_contents>
+                            <has_text text="PNG"/>
+                        </assert_contents>
+                    </element>
+                    <element name="Mean_LCBD_through_time" ftype="png">
+                        <assert_contents>
+                            <has_text text="PNG"/>
+                        </assert_contents>
+                    </element>
+                    <element name="SCBD_Species_Radar_plot" ftype="png">
+                        <assert_contents>
+                            <has_text text="PNG"/>
+                        </assert_contents>
+                    </element>
+                </output_collection>
+            </test>
+        </tests>
+        <expand macro="topic"/>  
+        <help><![CDATA[
+=======================================================================================
+Computes measures of beta diversity : Species and Local Contributions to Beta Diversity 
+=======================================================================================
+
+**What it does**
+
+This tool computes Species and Local Contributions to Beta Diversity (SCBD and LCBD) with Hellinger method and 9999 permutations from a species occurence file :
+
+- **Creates two text files** : LCBD comparative indicators of the ecological uniqueness of the sites and SCBD degree of variation for individual species across the study area. The LCBD represents the degree of uniqueness of the sites in their taxonomic compositions. The "Beta diversity" value represents the total LCBD, hence if it equals 1, there is no taxon in common in sites, each site is entirely unique and if it equals 0, each site is identical in terms of their taxon composition.
+
+- 3, 4 or 5 plots according to what you choose : 
+    - A plot representing LCBD repartition according to sites and date ; ⚠️ hard to read over 40 dates and/or 70 sites
+    - A plot representing mean LCDB and confidence intervals for each date ; ⚠️ hard to read over 40 dates
+    - A radar plot representing  SCDB for each taxon ; ⚠️ hard to read over 80 taxons but every taxon is alphabetically classified clockwise on the radar plot so it should be easy to find the correspondance over this number
+    - If you choose to get a spatialized representation, a map of LCBD values according to longitudes and latitudes ;
+    - If you choose to get an additional LCBD representation, a plot of LCBD values through time for each values of the separation factor you chose. ⚠️ hard to read over 40 dates and/or 70 levels
+
+
+**Input description**
+
+A tabular file with observation data. Must at least contain four columns
+which associate abundance, sites, dates and species ID.
+
++------------+-----------+--------------+------------+
+|  abundance |   dates   | species.code |    site    |
++============+===========+==============+============+
+|    2       |    2014   |   speciesID  |            |
++------------+-----------+--------------+------------+
+|    ...     |    ...    |      ...     |    ...     |
++------------+-----------+--------------+------------+
+
+If you choose to get a spatialized representation of the LCBD, you'll need to have two columns with your spatial coordinates latitude and longitude in decimal degrees.
+
+**Output**
+
+A text and png files. The text file contains a table with information on the beta diversity and the png files shows multiple plots according to one type of variable in order to vizualize the beta diversity.
+|
+
+    ]]></help>
+    
+<expand macro="book_bibref"/>
+
+</tool>
diff -r 000000000000 -r fb7b2cbd80bb macro.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macro.xml	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,65 @@
+<macros>
+    <token name="@VERSION@">0.0.0</token>
+    <xml name="Explo_requirements">
+        <requirements>
+           <requirement type="package" version="3.3.3">r-ggplot2</requirement>
+           <yield />
+        </requirements>
+    </xml>
+    <xml name="explo_input">
+       <param name="input" type="data" format="tabular" label="Input table"/>
+       <param name="colnames" type="boolean" label="First line is a header line" checked="true"/>
+    </xml>
+    <xml name="explo_filter_colli">
+        <filter> method['type'] == 'collinearity'</filter>
+    </xml>
+    <xml name="explo_filter_pca">
+        <filter> method['type'] == 'pca'</filter>
+    </xml>
+    <xml name="explo_filter_vif">
+        <filter> method['type'] == 'vif'</filter>
+    </xml>
+    <xml name="explo_filter_interr">
+        <filter> method['type'] == 'interr'</filter>
+    </xml>
+    <xml name="explo_filter_autocorr">
+        <filter> method['type'] == 'autocorr'</filter>
+    </xml>
+    <xml name="explo_filter_abund">
+        <filter> method['type'] == 'abund'</filter>
+    </xml>
+    <xml name="explo_filter_pres_abs">
+        <filter> method['type'] == 'pres_abs'</filter>
+    </xml>
+    <xml name="explo_filter_rare">
+        <filter> method['type'] == 'rare'</filter>
+    </xml>
+    <xml name="explo_bibref">
+       <citations>
+            <citation type="bibtex">
+            @unpublished{
+            title={ A protocol for data exploration to avoid common statistical problems },
+            authors={Alain F. Zuur,  Elena N. Ieno,  Chris S. Elphick},
+            url={https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/j.2041-210X.2009.00001.x}
+            }
+            </citation>
+        </citations>
+    </xml>
+    <xml name="book_bibref">
+        <citations>
+            <citation type="bibtex">
+            @unpublished{
+            title={ Numerical Ecology with R },
+            author={Daniel Borcard, François Gillet, Pierre Legendre},
+            }
+            </citation>
+        </citations>
+    </xml>
+    <xml name="topic">
+        <edam_topics>
+           <edam_topic>topic_0610</edam_topic>
+           <edam_topic>topic_3050</edam_topic>
+        </edam_topics>
+    </xml>
+</macros>
+
diff -r 000000000000 -r fb7b2cbd80bb test-data/Data.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Data.tabular	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,2 @@
+"x"
+"1" 29
diff -r 000000000000 -r fb7b2cbd80bb test-data/Missing_species.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Missing_species.txt	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,6 @@
+
+There is not enough data on these species they appear too few times in the tabular-file
+
+Scorpaenidae
+Plesiopidae
+Serranidae
diff -r 000000000000 -r fb7b2cbd80bb test-data/Reel_life_survey_fish_modif.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Reel_life_survey_fish_modif.tabular	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,290 @@
+FID	Key	SurveyID	Country	Ecoregion	Realm	SiteCode	Site	SiteLat	SiteLong	SurveyDate	Depth	Phylum	Class	Family	Taxon	Block	Total	Diver	geom
+M2_FISH_DATA.1	1	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	2	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.2	2	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	5	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.3	3	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	2	8	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.4	4	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	6	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.5	5	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	9	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.6	6	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota hoesei	1	3	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.7	7	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota hoesei	2	19	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.8	8	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon histrio	1	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.9	9	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon histrio	2	3	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.10	10	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon sp. [3 GA]	1	12	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.11	11	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon spp.	2	5	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.12	12	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Scorpaenidae	Parascorpaena aurita	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.13	13	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Tripterygiidae	Ucla xenogrammus	1	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.14	14	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Tripterygiidae	Ucla xenogrammus	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.15	15	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Plesiopidae	Assessor macneilli	2	20	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.16	16	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	4	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.17	17	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.18	18	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	5	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.19	19	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	6	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.20	20	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.21	21	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	2	3	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.22	22	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	3	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.23	23	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Serranidae	Epinephelus fasciatus	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.24	24	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	6	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.25	25	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	8	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.26	26	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota hoesei	1	7	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.27	27	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota hoesei	2	12	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.28	28	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Gobiodon sp. [3 GA]	2	16	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.29	29	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Gobiodon spp.	2	7	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.30	30	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Paragobiodon echinocephalus	2	2	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.31	31	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis clathrata	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.32	32	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Apogonidae	Apogon spp.	1	1	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.33	33	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Serranidae	Diploprion bifasciatum	1	1	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.34	34	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	5	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.35	35	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Gobiodon histrio	1	1	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.36	36	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	2	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.37	37	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	1	2	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.38	38	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Salarias spp.	1	1	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.39	39	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	3	PBD	POINT (151.75 -23.53)
+M2_FISH_DATA.40	40	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	2	3	PBD	POINT (151.75 -23.53)
+M2_FISH_DATA.41	41	912345712	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Valenciennea decora	2	2	PBD	POINT (151.75 -23.53)
+M2_FISH_DATA.42	42	912345713	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8.1	Chordata	Actinopterygii	Apogonidae	Apogon spp.	1	1	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.43	43	912345713	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	3	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.44	44	912345713	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8.1	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	6	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.45	45	912345713	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8.1	Chordata	Actinopterygii	Muraenidae	Gymnothorax spp.	1	1	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.46	46	912345713	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	7	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.47	47	912345713	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2015-10-01T14:00:00Z	8.1	Chordata	Actinopterygii	Plesiopidae	Assessor macneilli	2	2	PBD	POINT (151.75 -23.53)
+M2_FISH_DATA.48	48	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Amblygobius phalaena	2	2	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.49	49	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Atrosalarias holomelas	1	2	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.50	50	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Apogonidae	Cheilodipterus quinquelineatus	1	2	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.51	51	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	3	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.52	52	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.53	53	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Serranidae	Epinephelus merra	1	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.54	54	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	3	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.55	55	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	2	8	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.56	56	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Opistognathidae	Opistognathus spp.	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.57	57	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	1	4	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.58	58	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	2	3	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.59	59	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Holocentridae	Sargocentron rubrum	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.60	60	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Valenciennea longipinnis	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.61	61	912347130	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Valenciennea muralis	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.62	62	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Amblyeleotris wheeleri	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.63	63	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Amblygobius phalaena	1	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.64	64	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Amblygobius phalaena	2	2	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.65	65	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Apogonidae	Cheilodipterus quinquelineatus	1	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.66	66	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	3	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.67	67	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	9	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.68	68	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	2	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.69	69	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	2	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.70	70	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.71	71	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Eviota prasites	2	2	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.72	72	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	6	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.73	73	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	2	7	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.74	74	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Opistognathidae	Opistognathus spp.	1	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.75	75	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Opistognathidae	Opistognathus spp.	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.76	76	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	1	2	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.77	77	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.78	78	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis queenslandica	1	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.79	79	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis queenslandica	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.80	80	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Holocentridae	Sargocentron rubrum	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.81	81	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Valenciennea longipinnis	2	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.82	82	912347131	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS2	Masthead Site 1	-23.53	151.75	2017-03-10T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Valenciennea muralis	1	1	CK	POINT (151.75 -23.53)
+M2_FISH_DATA.83	83	912345714	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS3	Masthead Site 2	-23.53	151.75	2015-10-02T14:00:00Z	7	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius mirabilis	1	3	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.84	84	912345714	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS3	Masthead Site 2	-23.53	151.75	2015-10-02T14:00:00Z	7	Chordata	Actinopterygii	Gobiidae	Eviota spp.	1	4	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.85	85	912345714	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS3	Masthead Site 2	-23.53	151.75	2015-10-02T14:00:00Z	7	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	1	2	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.86	86	912345714	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS3	Masthead Site 2	-23.53	151.75	2015-10-02T14:00:00Z	7	Chordata	Actinopterygii	Gobiidae	Eviota spp.	2	5	PBD	POINT (151.75 -23.53)
+M2_FISH_DATA.87	87	912345715	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS3	Masthead Site 2	-23.53	151.75	2015-10-02T14:00:00Z	7.1	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius mirabilis	1	13	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.88	88	912345715	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS3	Masthead Site 2	-23.53	151.75	2015-10-02T14:00:00Z	7.1	Chordata	Actinopterygii	Gobiidae	Eviota spp.	1	2	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.89	89	912345715	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS3	Masthead Site 2	-23.53	151.75	2015-10-02T14:00:00Z	7.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	1	1	ATC	POINT (151.75 -23.53)
+M2_FISH_DATA.90	90	912345716	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	2	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.91	91	912345716	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5	Chordata	Actinopterygii	Pseudochromidae	Labracinus cyclophthalmus	1	2	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.92	92	912345716	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	1	2	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.93	93	912345716	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5	Chordata	Actinopterygii	Blenniidae	Blenniid spp.	2	1	PBD	POINT (151.77 -23.5)
+M2_FISH_DATA.94	94	912345716	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	2	1	PBD	POINT (151.77 -23.5)
+M2_FISH_DATA.95	95	912345717	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5.1	Chordata	Actinopterygii	Serranidae	Diploprion bifasciatum	1	1	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.96	96	912345717	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	1	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.97	97	912345717	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	3	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.98	98	912345717	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5.1	Chordata	Actinopterygii	Pseudochromidae	Labracinus cyclophthalmus	1	1	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.99	99	912345717	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	1	1	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.100	100	912345717	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis hexophtalma	1	1	ATC	POINT (151.77 -23.5)
+M2_FISH_DATA.101	101	912345717	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	2	5	PBD	POINT (151.77 -23.5)
+M2_FISH_DATA.102	102	912345717	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2015-10-03T14:00:00Z	5.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis stricticeps	2	1	PBD	POINT (151.77 -23.5)
+M2_FISH_DATA.103	103	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Amblygobius phalaena	1	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.104	104	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Blenniidae	Atrosalarias holomelas	2	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.105	105	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Apogonidae	Cheilodipterus quinquelineatus	1	4	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.106	106	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	5	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.107	107	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	9	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.108	108	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	2	22	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.109	109	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	2	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.110	110	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.111	111	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Eviota prasites	2	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.112	112	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	23	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.113	113	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	2	29	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.114	114	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Pinguipedidae	Parapercis australis	1	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.115	115	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Pinguipedidae	Parapercis xanthozona	1	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.116	116	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Valenciennea longipinnis	1	8	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.117	117	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Valenciennea longipinnis	2	13	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.118	118	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Valenciennea muralis	1	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.119	119	912347120	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5	Chordata	Actinopterygii	Gobiidae	Valenciennea muralis	2	2	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.120	120	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	2	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.121	121	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	17	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.122	122	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	21	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.123	123	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	1	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.124	124	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	2	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.125	125	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	2	2	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.126	126	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	15	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.127	127	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	3	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.128	128	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	6	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.129	129	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Eviota prasites	2	2	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.130	130	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Eviota sebreei	2	1	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.131	131	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	30	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.132	132	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	2	13	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.133	133	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Plagiotremus laudandus	1	2	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.134	134	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Blenniidae	Plagiotremus laudandus	2	2	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.135	135	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Valenciennea longipinnis	1	12	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.136	136	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Valenciennea longipinnis	2	3	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.137	137	912347121	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS4	Erskyne Island Site 1	-23.5	151.77	2017-03-09T13:00:00Z	5.1	Chordata	Actinopterygii	Gobiidae	Valenciennea muralis	2	6	CK	POINT (151.77 -23.5)
+M2_FISH_DATA.138	138	912345718	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2015-10-03T14:00:00Z	6	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	6	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.139	139	912345718	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2015-10-03T14:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon histrio	1	2	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.140	140	912345719	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2015-10-03T14:00:00Z	6.1	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	3	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.141	141	912345719	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2015-10-03T14:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Gobiodon histrio	1	3	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.142	142	912345719	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2015-10-03T14:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota spp.	2	8	PBD	POINT (151.78 -23.5)
+M2_FISH_DATA.143	143	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Apogonidae	Apogon capricornis	1	95	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.144	144	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Apogonidae	Apogon capricornis	2	155	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.145	145	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	7	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.146	146	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	9	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.147	147	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	2	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.148	148	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	12	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.149	149	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	5	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.150	150	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Fusigobius neophytus	1	4	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.151	151	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	2	4	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.152	152	912347122	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6.1	Chordata	Actinopterygii	Pempherididae	Parapriacanthus ransonneti	1	225	GJE	POINT (151.78 -23.5)
+M2_FISH_DATA.153	153	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Amblygobius phalaena	1	3	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.154	154	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Apogonidae	Apogon capricornis	1	25	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.155	155	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Apogonidae	Apogon capricornis	2	60	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.156	156	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Atrosalarias holomelas	1	5	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.157	157	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Atrosalarias holomelas	2	3	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.158	158	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Crossosalarias macrospilus	1	1	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.159	159	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	1	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.160	160	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	3	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.161	161	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	2	1	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.162	162	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	1	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.163	163	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	1	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.164	164	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota prasites	1	1	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.165	165	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Muraenidae	Gymnothorax javanicus	1	1	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.166	166	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	4	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.167	167	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Pempherididae	Parapriacanthus ransonneti	1	85	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.168	168	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Pempherididae	Parapriacanthus ransonneti	2	200	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.169	169	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Pseudochromidae	Pseudochromis fuscus	1	1	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.170	170	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Synodontidae	Synodus variegatus	1	2	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.171	171	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Synodontidae	Synodus variegatus	2	2	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.172	172	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Apogonidae	Taeniamia leai	1	5	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.173	173	912347135	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS5	Erskyne Island Site 2	-23.5	151.78	2017-03-09T13:00:00Z	6	Chordata	Actinopterygii	Apogonidae	Taeniamia leai	2	10	CK	POINT (151.78 -23.5)
+M2_FISH_DATA.174	174	912345720	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	1	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.175	175	912345720	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	5	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.176	176	912345720	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	4	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.177	177	912345720	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7	Chordata	Actinopterygii	Pinguipedidae	Parapercis queenslandica	1	1	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.178	178	912345720	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7	Chordata	Actinopterygii	Holocentridae	Sargocentron rubrum	1	2	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.179	179	912345720	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7	Chordata	Actinopterygii	Pinguipedidae	Parapercis spp.	2	1	PBD	POINT (151.78 -23.5)
+M2_FISH_DATA.180	180	912345721	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7.1	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	3	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.181	181	912345721	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7.1	Chordata	Actinopterygii	Gobiidae	Istigobius decoratus	1	5	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.182	182	912345721	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7.1	Chordata	Actinopterygii	Holocentridae	Sargocentron rubrum	1	1	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.183	183	912345721	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7.1	Chordata	Actinopterygii	Synodontidae	Synodus variegatus	1	1	ATC	POINT (151.78 -23.5)
+M2_FISH_DATA.184	184	912345721	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7.1	Chordata	Actinopterygii	Gobiidae	Amblygobius phalaena	2	1	PBD	POINT (151.78 -23.5)
+M2_FISH_DATA.185	185	912345721	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7.1	Chordata	Actinopterygii	Pinguipedidae	Parapercis spp.	2	1	PBD	POINT (151.78 -23.5)
+M2_FISH_DATA.186	186	912345721	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS6	Erskyne Island Site 3	-23.5	151.78	2015-10-04T13:00:00Z	7.1	Chordata	Actinopterygii	Synodontidae	Synodus variegatus	2	1	PBD	POINT (151.78 -23.5)
+M2_FISH_DATA.187	187	912345722	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2015-10-04T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	4	ATC	POINT (151.95 -23.25)
+M2_FISH_DATA.188	188	912345722	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2015-10-04T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Blenniid spp.	2	2	PBD	POINT (151.95 -23.25)
+M2_FISH_DATA.189	189	912345722	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2015-10-04T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Gobiid spp.	2	1	PBD	POINT (151.95 -23.25)
+M2_FISH_DATA.190	190	912345723	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2015-10-04T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Cirripectes spp.	1	1	ATC	POINT (151.95 -23.25)
+M2_FISH_DATA.191	191	912345723	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2015-10-04T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	2	ATC	POINT (151.95 -23.25)
+M2_FISH_DATA.192	192	912345723	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2015-10-04T13:00:00Z	8.5	Chordata	Actinopterygii	Apogonidae	Apogonid spp.	2	2	PBD	POINT (151.95 -23.25)
+M2_FISH_DATA.193	193	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Cirripectes filamentosus	1	1	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.194	194	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	2	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.195	195	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	2	4	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.196	196	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	4	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.197	197	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	3	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.198	198	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	1	2	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.199	199	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	2	3	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.200	200	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	1	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.201	201	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	2	1	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.202	202	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	2	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.203	203	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Plagiotremus tapeinosoma	2	1	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.204	204	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Pleurosicya spp.	1	5	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.205	205	912347125	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Synodontidae	Synodus variegatus	2	1	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.206	206	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	2	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.207	207	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	2	6	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.208	208	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	3	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.209	209	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	2	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.210	210	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	1	2	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.211	211	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	2	3	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.212	212	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	2	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.213	213	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	2	1	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.214	214	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	3	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.215	215	912347126	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS7	Broomfield Reef Site 2	-23.25	151.95	2017-03-08T13:00:00Z	8.5	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	4	CK	POINT (151.95 -23.25)
+M2_FISH_DATA.216	216	912345724	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	10	ATC	POINT (151.94 -23.25)
+M2_FISH_DATA.217	217	912345724	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	6	ATC	POINT (151.94 -23.25)
+M2_FISH_DATA.218	218	912345724	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	2	ATC	POINT (151.94 -23.25)
+M2_FISH_DATA.219	219	912345724	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8	Chordata	Actinopterygii	Serranidae	Epinephelus fasciatus	1	2	ATC	POINT (151.94 -23.25)
+M2_FISH_DATA.220	220	912345724	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8	Chordata	Actinopterygii	Holocentridae	Sargocentron rubrum	1	1	ATC	POINT (151.94 -23.25)
+M2_FISH_DATA.221	221	912345724	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Ctenogobiops pomastictus	2	3	PBD	POINT (151.94 -23.25)
+M2_FISH_DATA.222	222	912345725	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	12	ATC	POINT (151.94 -23.25)
+M2_FISH_DATA.223	223	912345725	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	3	ATC	POINT (151.94 -23.25)
+M2_FISH_DATA.224	224	912345725	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2015-10-05T13:00:00Z	8.1	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	1	ATC	POINT (151.94 -23.25)
+M2_FISH_DATA.225	225	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Plesiopidae	Assessor macneilli	1	10	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.226	226	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Apogonidae	Cheilodipterus quinquelineatus	1	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.227	227	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	2	2	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.228	228	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	3	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.229	229	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.230	230	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	1	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.231	231	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	2	4	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.232	232	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	3	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.233	233	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	2	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.234	234	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	6	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.235	235	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	6	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.236	236	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Gobiidae	Gobiodon quinquestrigatus	2	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.237	237	912347123	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8	Chordata	Actinopterygii	Scorpaenidae	Scorpaenid spp.	1	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.238	238	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Blenniella chrysospilos	1	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.239	239	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	10	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.240	240	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	2	6	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.241	241	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	5	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.242	242	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	3	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.243	243	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	1	17	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.244	244	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius sp. [black and green]	2	16	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.245	245	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Ecsenius spp.	1	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.246	246	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	2	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.247	247	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	4	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.248	248	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Blenniidae	Plagiotremus tapeinosoma	1	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.249	249	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Holocentridae	Sargocentron rubrum	1	1	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.250	250	912347124	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS8	Broomfield Reef Site 1	-23.25	151.94	2017-03-08T13:00:00Z	8.1	Chordata	Actinopterygii	Tripterygiidae	Ucla xenogrammus	1	2	CK	POINT (151.94 -23.25)
+M2_FISH_DATA.251	251	912345726	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS9	Broomfield Reef Site 3	-23.26	151.95	2015-10-05T13:00:00Z	9	Chordata	Actinopterygii	Blenniidae	Cirripectes spp.	1	1	ATC	POINT (151.95 -23.26)
+M2_FISH_DATA.252	252	912345726	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS9	Broomfield Reef Site 3	-23.26	151.95	2015-10-05T13:00:00Z	9	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	3	ATC	POINT (151.95 -23.26)
+M2_FISH_DATA.253	253	912349189	Spain	Alboran Sea	Temperate Northern Atlantic	AND64	Isla San Andrés (Parque Natural)	36.99	-1.89	2015-09-13T14:00:00Z	11.5	Chordata	Actinopterygii	Apogonidae	Apogon imberbis	1	1	NDL	POINT (-1.8900000000000001 36.99)
+M2_FISH_DATA.254	254	912349189	Spain	Alboran Sea	Temperate Northern Atlantic	AND64	Isla San Andrés (Parque Natural)	36.99	-1.89	2015-09-13T14:00:00Z	11.5	Chordata	Actinopterygii	Blenniidae	Parablennius gattorugine	1	1	NDL	POINT (-1.8900000000000001 36.99)
+M2_FISH_DATA.255	255	912349189	Spain	Alboran Sea	Temperate Northern Atlantic	AND64	Isla San Andrés (Parque Natural)	36.99	-1.89	2015-09-13T14:00:00Z	11.5	Chordata	Actinopterygii	Tripterygiidae	Tripterygion delaisi	1	3	NDL	POINT (-1.8900000000000001 36.99)
+M2_FISH_DATA.256	256	912349190	Spain	Alboran Sea	Temperate Northern Atlantic	AND65	Isla San Juan	37.35	-1.65	2015-09-13T14:00:00Z	9.6	Chordata	Actinopterygii	Apogonidae	Apogon imberbis	1	1	JASF	POINT (-1.65 37.35)
+M2_FISH_DATA.257	257	912349190	Spain	Alboran Sea	Temperate Northern Atlantic	AND65	Isla San Juan	37.35	-1.65	2015-09-13T14:00:00Z	9.6	Chordata	Actinopterygii	Scorpaenidae	Scorpaena notata	1	2	JASF	POINT (-1.65 37.35)
+M2_FISH_DATA.258	258	912349190	Spain	Alboran Sea	Temperate Northern Atlantic	AND65	Isla San Juan	37.35	-1.65	2015-09-13T14:00:00Z	9.6	Chordata	Actinopterygii	Tripterygiidae	Tripterygion tripteronotum	1	2	JASF	POINT (-1.65 37.35)
+M2_FISH_DATA.259	259	912349192	Spain	Alboran Sea	Temperate Northern Atlantic	AND66	Villaricos Norte	37.31	-1.7	2015-09-13T14:00:00Z	8.5	Chordata	Actinopterygii	Muraenidae	Muraena helena	2	1	NSM	POINT (-1.7 37.31)
+M2_FISH_DATA.260	260	912349192	Spain	Alboran Sea	Temperate Northern Atlantic	AND66	Villaricos Norte	37.31	-1.7	2015-09-13T14:00:00Z	8.5	Chordata	Actinopterygii	Scorpaenidae	Scorpaena porcus	2	1	NSM	POINT (-1.7 37.31)
+M2_FISH_DATA.261	261	912349133	Spain	Alboran Sea	Temperate Northern Atlantic	AND7	Adra	36.74	-3.01	2013-11-26T13:00:00Z	1.8	Chordata	Actinopterygii	Gobiidae	Gobius bucchichi	1	20	JASF	POINT (-3.01 36.74)
+M2_FISH_DATA.262	262	912349133	Spain	Alboran Sea	Temperate Northern Atlantic	AND7	Adra	36.74	-3.01	2013-11-26T13:00:00Z	1.8	Chordata	Actinopterygii	Gobiidae	Gobius bucchichi	2	6	JASF	POINT (-3.01 36.74)
+M2_FISH_DATA.263	263	912349133	Spain	Alboran Sea	Temperate Northern Atlantic	AND7	Adra	36.74	-3.01	2013-11-26T13:00:00Z	1.8	Chordata	Actinopterygii	Blenniidae	Parablennius pilicornis	1	6	JASF	POINT (-3.01 36.74)
+M2_FISH_DATA.264	264	912349133	Spain	Alboran Sea	Temperate Northern Atlantic	AND7	Adra	36.74	-3.01	2013-11-26T13:00:00Z	1.8	Chordata	Actinopterygii	Blenniidae	Parablennius pilicornis	2	1	JASF	POINT (-3.01 36.74)
+M2_FISH_DATA.265	265	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Gobiidae	Gobius bucchichi	1	2	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.266	266	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Gobiidae	Gobius bucchichi	2	3	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.267	267	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Gobiidae	Gobius geniporus	1	3	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.268	268	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Gobiidae	Gobius geniporus	2	3	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.269	269	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Gobiesocidae	Lepadogaster lepadogaster	2	2	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.270	270	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Blenniidae	Parablennius pilicornis	1	5	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.271	271	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Blenniidae	Parablennius pilicornis	2	5	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.272	272	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Scorpaenidae	Scorpaena porcus	1	1	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.273	273	912349134	Spain	Alboran Sea	Temperate Northern Atlantic	AND8	Almeria puerto	36.83	-2.46	2013-11-27T13:00:00Z	1.8	Chordata	Actinopterygii	Scorpaenidae	Scorpaena porcus	2	1	JASF	POINT (-2.46 36.83)
+M2_FISH_DATA.274	274	912344582	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2014-07-14T14:00:00Z	3	Chordata	Actinopterygii	Gobiidae	Gobius bucchichi	1	27	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.275	275	912344582	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2014-07-14T14:00:00Z	3	Chordata	Actinopterygii	Gobiidae	Gobius bucchichi	2	27	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.276	276	912344582	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2014-07-14T14:00:00Z	3	Chordata	Actinopterygii	Gobiesocidae	Lepadogaster candolii	1	1	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.277	277	912344582	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2014-07-14T14:00:00Z	3	Chordata	Actinopterygii	Blenniidae	Parablennius pilicornis	1	6	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.278	278	912344582	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2014-07-14T14:00:00Z	3	Chordata	Actinopterygii	Blenniidae	Parablennius pilicornis	2	14	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.279	279	912344582	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2014-07-14T14:00:00Z	3	Chordata	Actinopterygii	Scorpaenidae	Scorpaena porcus	1	1	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.280	280	912344582	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2014-07-14T14:00:00Z	3	Chordata	Actinopterygii	Tripterygiidae	Tripterygion delaisi	1	1	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.281	281	912349135	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2013-11-27T13:00:00Z	2.4	Chordata	Actinopterygii	Gobiidae	Gobius bucchichi	1	3	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.282	282	912349135	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2013-11-27T13:00:00Z	2.4	Chordata	Actinopterygii	Gobiidae	Gobius bucchichi	2	2	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.283	283	912349135	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2013-11-27T13:00:00Z	2.4	Chordata	Actinopterygii	Blenniidae	Parablennius pilicornis	1	4	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.284	284	912349135	Spain	Alboran Sea	Temperate Northern Atlantic	AND9	Camping	36.82	-2.51	2013-11-27T13:00:00Z	2.4	Chordata	Actinopterygii	Blenniidae	Parablennius pilicornis	2	6	JASF	POINT (-2.51 36.82)
+M2_FISH_DATA.285	285	912345928	Antarctica	Antarctic Peninsula	Southern Ocean	ANT4	End Runway	-67.57	-68.13	2016-01-05T13:00:00Z	9	Chordata	Actinopterygii	Nototheniidae	Trematomus hansoni	1	1	SM	POINT (-68.13 -67.57)
+M2_FISH_DATA.286	286	912346517	Antarctica	Antarctic Peninsula	Southern Ocean	ANT5	Wharf	-67.57	-68.13	2016-01-06T13:00:00Z	9	Chordata	Actinopterygii	Nototheniidae	Notothenia coriiceps	2	1	SM	POINT (-68.13 -67.57)
+M2_FISH_DATA.287	287	912346517	Antarctica	Antarctic Peninsula	Southern Ocean	ANT5	Wharf	-67.57	-68.13	2016-01-06T13:00:00Z	9	Chordata	Actinopterygii	Nototheniidae	Trematomus newnesi	1	1	SM	POINT (-68.13 -67.57)
+M2_FISH_DATA.288	288	912346518	Antarctica	Antarctic Peninsula	Southern Ocean	ANT7	Trovall	-67.6	-68.21	2016-02-11T13:00:00Z	12	Chordata	Actinopterygii	Harpagiferidae	Harpagifer antarcticus	1	1	SM	POINT (-68.21 -67.6)
+M2_FISH_DATA.289	289	912346518	Antarctica	Antarctic Peninsula	Southern Ocean	ANT7	Trovall	-67.6	-68.21	2016-02-11T13:00:00Z	12	Chordata	Actinopterygii	Nototheniidae	Nototheniid spp.	2	1	SM	POINT (-68.21 -67.6)
diff -r 000000000000 -r fb7b2cbd80bb test-data/Reel_life_survey_fish_modif2.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Reel_life_survey_fish_modif2.tabular	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,30 @@
+FID	Key	SurveyID	Country	Ecoregion	Realm	SiteCode	Site	SiteLat	SiteLong	SurveyDate	Depth	Phylum	Class	Family	Taxon	Block	Total	Diver	geom
+M2_FISH_DATA.1	1	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	2	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.2	2	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	5	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.3	3	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	2	8	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.4	4	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	6	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.5	5	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	9	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.6	6	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota hoesei	1	3	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.7	7	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Eviota hoesei	2	19	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.8	8	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon histrio	1	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.9	9	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon histrio	2	3	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.10	10	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon sp. [3 GA]	1	12	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.11	11	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Gobiidae	Gobiodon spp.	2	5	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.12	12	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Scorpaenidae	Parascorpaena aurita	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.13	13	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Tripterygiidae	Ucla xenogrammus	1	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.14	14	912347736	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6	Chordata	Actinopterygii	Tripterygiidae	Ucla xenogrammus	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.15	15	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Plesiopidae	Assessor macneilli	2	20	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.16	16	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	1	4	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.17	17	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius bicolor	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.18	18	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	1	5	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.19	19	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius mandibularis	2	6	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.20	20	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	1	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.21	21	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Blenniidae	Ecsenius stictus	2	3	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.22	22	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Tripterygiidae	Enneapterygius similis	1	3	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.23	23	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Serranidae	Epinephelus fasciatus	2	1	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.24	24	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	1	6	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.25	25	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota guttata	2	8	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.26	26	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota hoesei	1	7	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.27	27	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Eviota hoesei	2	12	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.28	28	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Gobiodon sp. [3 GA]	2	16	LVS	POINT (151.92 -23.18)
+M2_FISH_DATA.29	29	912347737	Australia	Central and Southern Great Barrier Reef	Central Indo-Pacific	AIMS12	North Island Site 3	-23.18	151.92	2017-02-13T13:00:00Z	6.1	Chordata	Actinopterygii	Gobiidae	Gobiodon spp.	2	7	LVS	POINT (151.92 -23.18)
diff -r 000000000000 -r fb7b2cbd80bb test-data/SCBD.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/SCBD.txt	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,4 @@
+    Blenniidae       Gobiidae   Scorpaenidae Tripterygiidae    Plesiopidae 
+    0.13452280     0.12622864     0.05950360     0.15163110     0.07035376 
+    Apogonidae  Nototheniidae 
+    0.06153987     0.14519360 
diff -r 000000000000 -r fb7b2cbd80bb test-data/data_frenchbbs.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/data_frenchbbs.tabular	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,851 @@
+"carre"	"annee"	"espece"	"abond"
+"440072"	2014	"ALAARV"	4
+"440072"	2014	"PARCAE"	5
+"440168"	2014	"ALAARV"	1
+"440168"	2014	"PARCAE"	10
+"440168"	2017	"ALAARV"	2
+"440168"	2017	"PARCAE"	12
+"440168"	2018	"ALAARV"	2
+"440168"	2018	"PARCAE"	20
+"440211"	2014	"ALAARV"	10
+"440211"	2014	"PARCAE"	5
+"440211"	2015	"ALAARV"	11
+"440211"	2015	"PARCAE"	6
+"440211"	2016	"ALAARV"	11
+"440211"	2016	"PARCAE"	2
+"440211"	2017	"ALAARV"	9
+"440211"	2017	"PARCAE"	2
+"440211"	2018	"ALAARV"	10
+"440211"	2018	"PARCAE"	8
+"440235"	2005	"ALAARV"	3
+"440235"	2005	"PARCAE"	15
+"440235"	2006	"ALAARV"	6
+"440235"	2006	"PARCAE"	12
+"440235"	2007	"ALAARV"	1
+"440235"	2007	"PARCAE"	10
+"440235"	2008	"ALAARV"	1
+"440235"	2008	"PARCAE"	12
+"440235"	2009	"ALAARV"	0
+"440235"	2009	"PARCAE"	13
+"440278"	2008	"ALAARV"	7
+"440278"	2008	"PARCAE"	7
+"440278"	2009	"ALAARV"	8
+"440278"	2009	"PARCAE"	14
+"440278"	2010	"ALAARV"	7
+"440278"	2010	"PARCAE"	5
+"440278"	2011	"ALAARV"	8
+"440278"	2011	"PARCAE"	7
+"440278"	2012	"ALAARV"	7
+"440278"	2012	"PARCAE"	8
+"440278"	2013	"ALAARV"	10
+"440278"	2013	"PARCAE"	8
+"440278"	2014	"ALAARV"	6
+"440278"	2014	"PARCAE"	7
+"440278"	2015	"ALAARV"	7
+"440278"	2015	"PARCAE"	7
+"440278"	2016	"ALAARV"	7
+"440278"	2016	"PARCAE"	7
+"440278"	2017	"ALAARV"	6
+"440278"	2017	"PARCAE"	2
+"440278"	2018	"ALAARV"	7
+"440278"	2018	"PARCAE"	7
+"440310"	2011	"ALAARV"	12
+"440310"	2011	"PARCAE"	5
+"440310"	2012	"ALAARV"	15
+"440310"	2012	"PARCAE"	13
+"440310"	2013	"ALAARV"	26
+"440310"	2013	"PARCAE"	12
+"440310"	2014	"ALAARV"	14
+"440310"	2014	"PARCAE"	8
+"440310"	2015	"ALAARV"	11
+"440310"	2015	"PARCAE"	8
+"440310"	2016	"ALAARV"	14
+"440310"	2016	"PARCAE"	10
+"440310"	2017	"ALAARV"	13
+"440310"	2017	"PARCAE"	12
+"440310"	2018	"ALAARV"	12
+"440310"	2018	"PARCAE"	11
+"440398"	2012	"ALAARV"	2
+"440398"	2012	"PARCAE"	2
+"440398"	2013	"ALAARV"	2
+"440398"	2013	"PARCAE"	2
+"440398"	2014	"ALAARV"	4
+"440398"	2014	"PARCAE"	6
+"440411"	2004	"ALAARV"	16
+"440411"	2004	"PARCAE"	5
+"440411"	2005	"ALAARV"	14
+"440411"	2005	"PARCAE"	8
+"440411"	2006	"ALAARV"	18
+"440411"	2006	"PARCAE"	10
+"440411"	2007	"ALAARV"	15
+"440411"	2007	"PARCAE"	7
+"440411"	2008	"ALAARV"	12
+"440411"	2008	"PARCAE"	9
+"440411"	2009	"ALAARV"	11
+"440411"	2009	"PARCAE"	5
+"440411"	2010	"ALAARV"	11
+"440411"	2010	"PARCAE"	2
+"440411"	2011	"ALAARV"	16
+"440411"	2011	"PARCAE"	5
+"440411"	2012	"ALAARV"	18
+"440411"	2012	"PARCAE"	2
+"440411"	2013	"ALAARV"	14
+"440411"	2013	"PARCAE"	11
+"440411"	2014	"ALAARV"	15
+"440411"	2014	"PARCAE"	9
+"440411"	2015	"ALAARV"	16
+"440411"	2015	"PARCAE"	3
+"440411"	2016	"ALAARV"	9
+"440411"	2016	"PARCAE"	3
+"440411"	2017	"ALAARV"	14
+"440411"	2017	"PARCAE"	13
+"440411"	2018	"ALAARV"	12
+"440411"	2018	"PARCAE"	6
+"440430"	2006	"ALAARV"	0
+"440430"	2006	"PARCAE"	5
+"440430"	2007	"ALAARV"	0
+"440430"	2007	"PARCAE"	4
+"440430"	2008	"ALAARV"	0
+"440430"	2008	"PARCAE"	7
+"440430"	2010	"ALAARV"	0
+"440430"	2010	"PARCAE"	3
+"440430"	2012	"ALAARV"	0
+"440430"	2012	"PARCAE"	2
+"440430"	2014	"ALAARV"	0
+"440430"	2014	"PARCAE"	3
+"440456"	2001	"ALAARV"	3
+"440456"	2001	"PARCAE"	10
+"440456"	2002	"ALAARV"	4
+"440456"	2002	"PARCAE"	11
+"440456"	2003	"ALAARV"	4
+"440456"	2003	"PARCAE"	14
+"440456"	2004	"ALAARV"	6
+"440456"	2004	"PARCAE"	16
+"440456"	2005	"ALAARV"	6
+"440456"	2005	"PARCAE"	13
+"440456"	2006	"ALAARV"	4
+"440456"	2006	"PARCAE"	9
+"440456"	2007	"ALAARV"	5
+"440456"	2007	"PARCAE"	11
+"440456"	2008	"ALAARV"	2
+"440456"	2008	"PARCAE"	8
+"440456"	2009	"ALAARV"	4
+"440456"	2009	"PARCAE"	10
+"440456"	2010	"ALAARV"	2
+"440456"	2010	"PARCAE"	15
+"440456"	2011	"ALAARV"	4
+"440456"	2011	"PARCAE"	14
+"440456"	2012	"ALAARV"	0
+"440456"	2012	"PARCAE"	11
+"440456"	2014	"ALAARV"	2
+"440456"	2014	"PARCAE"	12
+"440462"	2001	"ALAARV"	3
+"440462"	2001	"PARCAE"	3
+"440462"	2002	"ALAARV"	6
+"440462"	2002	"PARCAE"	5
+"440462"	2003	"ALAARV"	5
+"440462"	2003	"PARCAE"	8
+"440462"	2004	"ALAARV"	2
+"440462"	2004	"PARCAE"	6
+"440462"	2005	"ALAARV"	0
+"440462"	2005	"PARCAE"	13
+"440462"	2006	"ALAARV"	8
+"440462"	2006	"PARCAE"	11
+"440462"	2007	"ALAARV"	0
+"440462"	2007	"PARCAE"	13
+"440462"	2008	"ALAARV"	0
+"440462"	2008	"PARCAE"	12
+"440462"	2009	"ALAARV"	4
+"440462"	2009	"PARCAE"	11
+"440462"	2010	"ALAARV"	2
+"440462"	2010	"PARCAE"	18
+"440462"	2011	"ALAARV"	2
+"440462"	2011	"PARCAE"	7
+"440462"	2012	"ALAARV"	0
+"440462"	2012	"PARCAE"	14
+"440462"	2013	"ALAARV"	3
+"440462"	2013	"PARCAE"	9
+"440462"	2014	"ALAARV"	0
+"440462"	2014	"PARCAE"	11
+"440480"	2001	"ALAARV"	14
+"440480"	2001	"PARCAE"	3
+"440480"	2002	"ALAARV"	6
+"440480"	2002	"PARCAE"	7
+"440480"	2003	"ALAARV"	5
+"440480"	2003	"PARCAE"	4
+"440480"	2004	"ALAARV"	5
+"440480"	2004	"PARCAE"	3
+"440480"	2005	"ALAARV"	7
+"440480"	2005	"PARCAE"	8
+"440480"	2006	"ALAARV"	6
+"440480"	2006	"PARCAE"	1
+"440480"	2007	"ALAARV"	7
+"440480"	2007	"PARCAE"	2
+"440480"	2008	"ALAARV"	3
+"440480"	2008	"PARCAE"	8
+"440480"	2009	"ALAARV"	3
+"440480"	2009	"PARCAE"	2
+"440480"	2010	"ALAARV"	6
+"440480"	2010	"PARCAE"	8
+"440480"	2011	"ALAARV"	5
+"440480"	2011	"PARCAE"	1
+"440480"	2012	"ALAARV"	7
+"440480"	2012	"PARCAE"	10
+"440480"	2013	"ALAARV"	1
+"440480"	2013	"PARCAE"	5
+"440480"	2014	"ALAARV"	4
+"440480"	2014	"PARCAE"	5
+"440480"	2015	"ALAARV"	0
+"440480"	2015	"PARCAE"	11
+"440480"	2016	"ALAARV"	4
+"440480"	2016	"PARCAE"	5
+"440480"	2017	"ALAARV"	3
+"440480"	2017	"PARCAE"	6
+"440637"	2015	"ALAARV"	1
+"440637"	2015	"PARCAE"	15
+"440637"	2016	"ALAARV"	2
+"440637"	2016	"PARCAE"	15
+"440637"	2017	"ALAARV"	1
+"440637"	2017	"PARCAE"	7
+"440637"	2018	"ALAARV"	2
+"440637"	2018	"PARCAE"	6
+"440660"	2001	"ALAARV"	7
+"440660"	2001	"PARCAE"	10
+"440660"	2002	"ALAARV"	9
+"440660"	2002	"PARCAE"	8
+"440660"	2003	"ALAARV"	10
+"440660"	2003	"PARCAE"	5
+"440660"	2004	"ALAARV"	6
+"440660"	2004	"PARCAE"	3
+"440660"	2005	"ALAARV"	9
+"440660"	2005	"PARCAE"	11
+"440660"	2006	"ALAARV"	8
+"440660"	2006	"PARCAE"	9
+"440660"	2007	"ALAARV"	6
+"440660"	2007	"PARCAE"	4
+"440660"	2008	"ALAARV"	9
+"440660"	2008	"PARCAE"	15
+"440660"	2009	"ALAARV"	5
+"440660"	2009	"PARCAE"	3
+"440660"	2010	"ALAARV"	10
+"440660"	2010	"PARCAE"	4
+"440660"	2011	"ALAARV"	11
+"440660"	2011	"PARCAE"	4
+"440660"	2012	"ALAARV"	10
+"440660"	2012	"PARCAE"	2
+"440660"	2013	"ALAARV"	9
+"440660"	2013	"PARCAE"	7
+"440660"	2014	"ALAARV"	6
+"440660"	2014	"PARCAE"	10
+"440665"	2016	"ALAARV"	0
+"440665"	2016	"PARCAE"	14
+"440665"	2017	"ALAARV"	0
+"440665"	2017	"PARCAE"	12
+"440665"	2018	"ALAARV"	0
+"440665"	2018	"PARCAE"	7
+"440817"	2001	"ALAARV"	1
+"440817"	2001	"PARCAE"	10
+"440817"	2002	"ALAARV"	2
+"440817"	2002	"PARCAE"	15
+"440817"	2003	"ALAARV"	1
+"440817"	2003	"PARCAE"	14
+"440817"	2004	"ALAARV"	2
+"440817"	2004	"PARCAE"	24
+"440817"	2005	"ALAARV"	0
+"440817"	2005	"PARCAE"	12
+"440817"	2006	"ALAARV"	0
+"440817"	2006	"PARCAE"	6
+"440817"	2007	"ALAARV"	1
+"440817"	2007	"PARCAE"	5
+"440817"	2008	"ALAARV"	0
+"440817"	2008	"PARCAE"	11
+"440817"	2009	"ALAARV"	1
+"440817"	2009	"PARCAE"	13
+"440817"	2010	"ALAARV"	0
+"440817"	2010	"PARCAE"	8
+"440817"	2011	"ALAARV"	0
+"440817"	2011	"PARCAE"	6
+"440817"	2012	"ALAARV"	0
+"440817"	2012	"PARCAE"	4
+"440817"	2013	"ALAARV"	0
+"440817"	2013	"PARCAE"	4
+"440841"	2016	"ALAARV"	2
+"440841"	2016	"PARCAE"	13
+"440841"	2017	"ALAARV"	8
+"440841"	2017	"PARCAE"	20
+"440877"	2006	"ALAARV"	1
+"440877"	2006	"PARCAE"	4
+"440877"	2007	"ALAARV"	0
+"440877"	2007	"PARCAE"	8
+"440877"	2008	"ALAARV"	1
+"440877"	2008	"PARCAE"	8
+"440877"	2009	"ALAARV"	0
+"440877"	2009	"PARCAE"	6
+"440877"	2010	"ALAARV"	0
+"440877"	2010	"PARCAE"	3
+"440877"	2011	"ALAARV"	0
+"440877"	2011	"PARCAE"	3
+"440877"	2012	"ALAARV"	1
+"440877"	2012	"PARCAE"	8
+"440877"	2013	"ALAARV"	0
+"440877"	2013	"PARCAE"	1
+"440877"	2014	"ALAARV"	0
+"440877"	2014	"PARCAE"	3
+"440877"	2015	"ALAARV"	0
+"440877"	2015	"PARCAE"	4
+"440877"	2016	"ALAARV"	0
+"440877"	2016	"PARCAE"	4
+"440877"	2017	"ALAARV"	1
+"440877"	2017	"PARCAE"	5
+"440877"	2018	"ALAARV"	0
+"440877"	2018	"PARCAE"	10
+"440891"	2002	"ALAARV"	12
+"440891"	2002	"PARCAE"	1
+"440891"	2003	"ALAARV"	21
+"440891"	2003	"PARCAE"	2
+"440891"	2004	"ALAARV"	14
+"440891"	2004	"PARCAE"	5
+"440891"	2005	"ALAARV"	16
+"440891"	2005	"PARCAE"	4
+"440891"	2006	"ALAARV"	7
+"440891"	2006	"PARCAE"	1
+"440891"	2008	"ALAARV"	10
+"440891"	2008	"PARCAE"	4
+"440891"	2009	"ALAARV"	10
+"440891"	2009	"PARCAE"	4
+"440891"	2011	"ALAARV"	8
+"440891"	2011	"PARCAE"	11
+"440891"	2013	"ALAARV"	5
+"440891"	2013	"PARCAE"	5
+"440891"	2014	"ALAARV"	7
+"440891"	2014	"PARCAE"	8
+"440891"	2015	"ALAARV"	6
+"440891"	2015	"PARCAE"	2
+"440891"	2016	"ALAARV"	7
+"440891"	2016	"PARCAE"	4
+"440891"	2017	"ALAARV"	4
+"440891"	2017	"PARCAE"	3
+"440891"	2018	"ALAARV"	4
+"440891"	2018	"PARCAE"	5
+"440932"	2015	"ALAARV"	3
+"440932"	2015	"PARCAE"	11
+"440932"	2016	"ALAARV"	3
+"440932"	2016	"PARCAE"	14
+"440932"	2017	"ALAARV"	1
+"440932"	2017	"PARCAE"	16
+"440932"	2018	"ALAARV"	2
+"440932"	2018	"PARCAE"	15
+"440989"	2018	"ALAARV"	0
+"440989"	2018	"PARCAE"	8
+"440990"	2010	"ALAARV"	1
+"440990"	2010	"PARCAE"	1
+"440990"	2011	"ALAARV"	2
+"440990"	2011	"PARCAE"	15
+"440990"	2012	"ALAARV"	5
+"440990"	2012	"PARCAE"	7
+"440990"	2013	"ALAARV"	2
+"440990"	2013	"PARCAE"	10
+"440990"	2014	"ALAARV"	1
+"440990"	2014	"PARCAE"	26
+"440990"	2015	"ALAARV"	7
+"440990"	2015	"PARCAE"	12
+"440990"	2016	"ALAARV"	2
+"440990"	2016	"PARCAE"	9
+"440990"	2017	"ALAARV"	4
+"440990"	2017	"PARCAE"	7
+"440990"	2018	"ALAARV"	5
+"440990"	2018	"PARCAE"	7
+"440993"	2001	"ALAARV"	0
+"440993"	2001	"PARCAE"	6
+"440993"	2002	"ALAARV"	1
+"440993"	2002	"PARCAE"	5
+"440993"	2003	"ALAARV"	1
+"440993"	2003	"PARCAE"	7
+"440993"	2004	"ALAARV"	0
+"440993"	2004	"PARCAE"	7
+"440993"	2005	"ALAARV"	2
+"440993"	2005	"PARCAE"	10
+"440993"	2006	"ALAARV"	0
+"440993"	2006	"PARCAE"	10
+"440993"	2007	"ALAARV"	2
+"440993"	2007	"PARCAE"	8
+"440993"	2008	"ALAARV"	0
+"440993"	2008	"PARCAE"	8
+"440993"	2009	"ALAARV"	0
+"440993"	2009	"PARCAE"	8
+"440993"	2010	"ALAARV"	0
+"440993"	2010	"PARCAE"	16
+"440993"	2011	"ALAARV"	1
+"440993"	2011	"PARCAE"	6
+"440993"	2012	"ALAARV"	0
+"440993"	2012	"PARCAE"	2
+"441008"	2002	"ALAARV"	12
+"441008"	2002	"PARCAE"	0
+"441008"	2003	"ALAARV"	14
+"441008"	2003	"PARCAE"	0
+"441008"	2004	"ALAARV"	11
+"441008"	2004	"PARCAE"	0
+"441008"	2005	"ALAARV"	12
+"441008"	2005	"PARCAE"	0
+"441008"	2014	"ALAARV"	7
+"441008"	2014	"PARCAE"	0
+"441008"	2015	"ALAARV"	8
+"441008"	2015	"PARCAE"	0
+"441008"	2016	"ALAARV"	3
+"441008"	2016	"PARCAE"	0
+"441008"	2017	"ALAARV"	7
+"441008"	2017	"PARCAE"	0
+"441008"	2018	"ALAARV"	9
+"441008"	2018	"PARCAE"	0
+"441032"	2016	"ALAARV"	0
+"441032"	2016	"PARCAE"	7
+"441032"	2017	"ALAARV"	0
+"441032"	2017	"PARCAE"	8
+"441048"	2002	"ALAARV"	0
+"441048"	2002	"PARCAE"	19
+"441048"	2003	"ALAARV"	0
+"441048"	2003	"PARCAE"	0
+"441051"	2016	"ALAARV"	0
+"441051"	2016	"PARCAE"	3
+"441051"	2017	"ALAARV"	2
+"441051"	2017	"PARCAE"	3
+"441053"	2001	"ALAARV"	0
+"441053"	2001	"PARCAE"	2
+"441053"	2002	"ALAARV"	0
+"441053"	2002	"PARCAE"	4
+"441053"	2003	"ALAARV"	0
+"441053"	2003	"PARCAE"	4
+"441053"	2004	"ALAARV"	0
+"441053"	2004	"PARCAE"	1
+"441053"	2005	"ALAARV"	1
+"441053"	2005	"PARCAE"	5
+"441053"	2006	"ALAARV"	0
+"441053"	2006	"PARCAE"	4
+"441053"	2007	"ALAARV"	0
+"441053"	2007	"PARCAE"	5
+"441053"	2008	"ALAARV"	0
+"441053"	2008	"PARCAE"	5
+"441053"	2009	"ALAARV"	0
+"441053"	2009	"PARCAE"	0
+"441053"	2010	"ALAARV"	0
+"441053"	2010	"PARCAE"	3
+"441053"	2011	"ALAARV"	2
+"441053"	2011	"PARCAE"	3
+"441053"	2012	"ALAARV"	0
+"441053"	2012	"PARCAE"	4
+"441053"	2013	"ALAARV"	0
+"441053"	2013	"PARCAE"	0
+"441053"	2014	"ALAARV"	0
+"441053"	2014	"PARCAE"	2
+"441053"	2015	"ALAARV"	0
+"441053"	2015	"PARCAE"	3
+"441053"	2016	"ALAARV"	0
+"441053"	2016	"PARCAE"	2
+"441053"	2017	"ALAARV"	0
+"441053"	2017	"PARCAE"	2
+"441053"	2018	"ALAARV"	0
+"441053"	2018	"PARCAE"	2
+"441061"	2001	"ALAARV"	2
+"441061"	2001	"PARCAE"	1
+"441061"	2002	"ALAARV"	0
+"441061"	2002	"PARCAE"	2
+"441061"	2003	"ALAARV"	0
+"441061"	2003	"PARCAE"	5
+"441061"	2004	"ALAARV"	0
+"441061"	2004	"PARCAE"	1
+"441061"	2005	"ALAARV"	0
+"441061"	2005	"PARCAE"	1
+"441061"	2006	"ALAARV"	0
+"441061"	2006	"PARCAE"	4
+"441061"	2007	"ALAARV"	0
+"441061"	2007	"PARCAE"	7
+"441061"	2008	"ALAARV"	0
+"441061"	2008	"PARCAE"	7
+"441061"	2009	"ALAARV"	0
+"441061"	2009	"PARCAE"	2
+"441061"	2010	"ALAARV"	0
+"441061"	2010	"PARCAE"	3
+"441061"	2011	"ALAARV"	0
+"441061"	2011	"PARCAE"	9
+"441061"	2012	"ALAARV"	0
+"441061"	2012	"PARCAE"	3
+"441077"	2004	"ALAARV"	2
+"441077"	2004	"PARCAE"	16
+"441077"	2005	"ALAARV"	2
+"441077"	2005	"PARCAE"	15
+"441077"	2006	"ALAARV"	1
+"441077"	2006	"PARCAE"	19
+"441077"	2007	"ALAARV"	1
+"441077"	2007	"PARCAE"	6
+"441077"	2008	"ALAARV"	3
+"441077"	2008	"PARCAE"	16
+"441077"	2009	"ALAARV"	1
+"441077"	2009	"PARCAE"	9
+"441077"	2010	"ALAARV"	1
+"441077"	2010	"PARCAE"	19
+"441077"	2011	"ALAARV"	0
+"441077"	2011	"PARCAE"	16
+"441077"	2012	"ALAARV"	0
+"441077"	2012	"PARCAE"	10
+"441077"	2013	"ALAARV"	0
+"441077"	2013	"PARCAE"	16
+"441077"	2015	"ALAARV"	0
+"441077"	2015	"PARCAE"	8
+"441077"	2016	"ALAARV"	1
+"441077"	2016	"PARCAE"	17
+"441077"	2017	"ALAARV"	0
+"441077"	2017	"PARCAE"	6
+"441077"	2018	"ALAARV"	0
+"441077"	2018	"PARCAE"	7
+"441082"	2001	"ALAARV"	2
+"441082"	2001	"PARCAE"	7
+"441082"	2002	"ALAARV"	5
+"441082"	2002	"PARCAE"	6
+"441082"	2003	"ALAARV"	0
+"441082"	2003	"PARCAE"	6
+"441082"	2004	"ALAARV"	1
+"441082"	2004	"PARCAE"	5
+"441082"	2005	"ALAARV"	2
+"441082"	2005	"PARCAE"	15
+"441082"	2006	"ALAARV"	0
+"441082"	2006	"PARCAE"	16
+"441082"	2007	"ALAARV"	1
+"441082"	2007	"PARCAE"	13
+"441082"	2008	"ALAARV"	0
+"441082"	2008	"PARCAE"	13
+"441082"	2009	"ALAARV"	0
+"441082"	2009	"PARCAE"	12
+"441082"	2010	"ALAARV"	0
+"441082"	2010	"PARCAE"	15
+"441082"	2012	"ALAARV"	0
+"441082"	2012	"PARCAE"	10
+"441082"	2013	"ALAARV"	0
+"441082"	2013	"PARCAE"	5
+"441082"	2014	"ALAARV"	0
+"441082"	2014	"PARCAE"	10
+"441082"	2015	"ALAARV"	0
+"441082"	2015	"PARCAE"	1
+"441109"	2002	"ALAARV"	0
+"441109"	2002	"PARCAE"	11
+"441109"	2003	"ALAARV"	0
+"441109"	2003	"PARCAE"	12
+"441109"	2004	"ALAARV"	0
+"441109"	2004	"PARCAE"	9
+"441109"	2005	"ALAARV"	1
+"441109"	2005	"PARCAE"	12
+"441109"	2006	"ALAARV"	0
+"441109"	2006	"PARCAE"	20
+"441109"	2007	"ALAARV"	0
+"441109"	2007	"PARCAE"	12
+"441109"	2008	"ALAARV"	0
+"441109"	2008	"PARCAE"	12
+"441109"	2009	"ALAARV"	0
+"441109"	2009	"PARCAE"	10
+"441109"	2010	"ALAARV"	0
+"441109"	2010	"PARCAE"	11
+"441109"	2011	"ALAARV"	0
+"441109"	2011	"PARCAE"	8
+"441109"	2012	"ALAARV"	0
+"441109"	2012	"PARCAE"	7
+"441109"	2013	"ALAARV"	0
+"441109"	2013	"PARCAE"	13
+"441109"	2014	"ALAARV"	0
+"441109"	2014	"PARCAE"	10
+"441109"	2016	"ALAARV"	1
+"441109"	2016	"PARCAE"	17
+"441109"	2017	"ALAARV"	0
+"441109"	2017	"PARCAE"	18
+"441109"	2018	"ALAARV"	0
+"441109"	2018	"PARCAE"	18
+"441132"	2002	"ALAARV"	3
+"441132"	2002	"PARCAE"	3
+"441132"	2003	"ALAARV"	3
+"441132"	2003	"PARCAE"	1
+"441132"	2004	"ALAARV"	3
+"441132"	2004	"PARCAE"	4
+"441132"	2005	"ALAARV"	6
+"441132"	2005	"PARCAE"	1
+"441132"	2006	"ALAARV"	6
+"441132"	2006	"PARCAE"	3
+"441132"	2007	"ALAARV"	3
+"441132"	2007	"PARCAE"	2
+"441132"	2008	"ALAARV"	1
+"441132"	2008	"PARCAE"	2
+"441132"	2009	"ALAARV"	1
+"441132"	2009	"PARCAE"	2
+"441132"	2010	"ALAARV"	0
+"441132"	2010	"PARCAE"	5
+"441132"	2011	"ALAARV"	2
+"441132"	2011	"PARCAE"	3
+"441132"	2012	"ALAARV"	0
+"441132"	2012	"PARCAE"	11
+"441132"	2013	"ALAARV"	0
+"441132"	2013	"PARCAE"	3
+"441132"	2014	"ALAARV"	0
+"441132"	2014	"PARCAE"	1
+"441132"	2016	"ALAARV"	2
+"441132"	2016	"PARCAE"	6
+"441132"	2017	"ALAARV"	2
+"441132"	2017	"PARCAE"	20
+"441132"	2018	"ALAARV"	0
+"441132"	2018	"PARCAE"	1
+"441153"	2009	"ALAARV"	0
+"441153"	2009	"PARCAE"	14
+"441153"	2010	"ALAARV"	0
+"441153"	2010	"PARCAE"	38
+"441153"	2011	"ALAARV"	0
+"441153"	2011	"PARCAE"	11
+"441153"	2012	"ALAARV"	0
+"441153"	2012	"PARCAE"	21
+"441178"	2001	"ALAARV"	4
+"441178"	2001	"PARCAE"	4
+"441178"	2002	"ALAARV"	0
+"441178"	2002	"PARCAE"	11
+"441178"	2003	"ALAARV"	5
+"441178"	2003	"PARCAE"	12
+"441178"	2004	"ALAARV"	0
+"441178"	2004	"PARCAE"	8
+"441178"	2005	"ALAARV"	1
+"441178"	2005	"PARCAE"	20
+"441178"	2006	"ALAARV"	0
+"441178"	2006	"PARCAE"	23
+"441178"	2007	"ALAARV"	2
+"441178"	2007	"PARCAE"	18
+"441178"	2008	"ALAARV"	1
+"441178"	2008	"PARCAE"	14
+"441178"	2009	"ALAARV"	0
+"441178"	2009	"PARCAE"	10
+"441178"	2010	"ALAARV"	1
+"441178"	2010	"PARCAE"	15
+"441178"	2011	"ALAARV"	0
+"441178"	2011	"PARCAE"	9
+"441178"	2012	"ALAARV"	2
+"441178"	2012	"PARCAE"	8
+"441178"	2013	"ALAARV"	0
+"441178"	2013	"PARCAE"	15
+"441178"	2014	"ALAARV"	0
+"441178"	2014	"PARCAE"	10
+"441178"	2015	"ALAARV"	1
+"441178"	2015	"PARCAE"	10
+"441178"	2016	"ALAARV"	0
+"441178"	2016	"PARCAE"	4
+"441178"	2017	"ALAARV"	0
+"441178"	2017	"PARCAE"	13
+"441178"	2018	"ALAARV"	1
+"441178"	2018	"PARCAE"	22
+"441217"	2003	"ALAARV"	4
+"441217"	2003	"PARCAE"	13
+"441217"	2004	"ALAARV"	5
+"441217"	2004	"PARCAE"	4
+"441217"	2005	"ALAARV"	2
+"441217"	2005	"PARCAE"	6
+"441217"	2006	"ALAARV"	3
+"441217"	2006	"PARCAE"	3
+"441217"	2007	"ALAARV"	3
+"441217"	2007	"PARCAE"	5
+"441217"	2008	"ALAARV"	5
+"441217"	2008	"PARCAE"	5
+"441217"	2011	"ALAARV"	6
+"441217"	2011	"PARCAE"	2
+"441217"	2014	"ALAARV"	2
+"441217"	2014	"PARCAE"	6
+"441217"	2016	"ALAARV"	5
+"441217"	2016	"PARCAE"	4
+"441217"	2018	"ALAARV"	4
+"441217"	2018	"PARCAE"	8
+"441233"	2001	"ALAARV"	2
+"441233"	2001	"PARCAE"	3
+"441233"	2002	"ALAARV"	1
+"441233"	2002	"PARCAE"	7
+"441233"	2003	"ALAARV"	1
+"441233"	2003	"PARCAE"	5
+"441233"	2004	"ALAARV"	0
+"441233"	2004	"PARCAE"	2
+"441233"	2005	"ALAARV"	1
+"441233"	2005	"PARCAE"	3
+"441233"	2006	"ALAARV"	0
+"441233"	2006	"PARCAE"	2
+"441233"	2007	"ALAARV"	0
+"441233"	2007	"PARCAE"	1
+"441233"	2008	"ALAARV"	1
+"441233"	2008	"PARCAE"	2
+"441233"	2009	"ALAARV"	0
+"441233"	2009	"PARCAE"	7
+"441236"	2004	"ALAARV"	0
+"441236"	2004	"PARCAE"	7
+"441236"	2005	"ALAARV"	0
+"441236"	2005	"PARCAE"	10
+"441236"	2006	"ALAARV"	0
+"441236"	2006	"PARCAE"	4
+"441236"	2007	"ALAARV"	0
+"441236"	2007	"PARCAE"	6
+"441236"	2008	"ALAARV"	0
+"441236"	2008	"PARCAE"	9
+"441236"	2009	"ALAARV"	0
+"441236"	2009	"PARCAE"	14
+"441236"	2010	"ALAARV"	0
+"441236"	2010	"PARCAE"	4
+"441236"	2011	"ALAARV"	0
+"441236"	2011	"PARCAE"	16
+"441236"	2012	"ALAARV"	0
+"441236"	2012	"PARCAE"	10
+"441236"	2013	"ALAARV"	0
+"441236"	2013	"PARCAE"	8
+"441242"	2002	"ALAARV"	0
+"441242"	2002	"PARCAE"	3
+"441242"	2003	"ALAARV"	0
+"441242"	2003	"PARCAE"	5
+"441242"	2004	"ALAARV"	0
+"441242"	2004	"PARCAE"	1
+"441242"	2005	"ALAARV"	0
+"441242"	2005	"PARCAE"	3
+"441242"	2006	"ALAARV"	0
+"441242"	2006	"PARCAE"	6
+"441242"	2007	"ALAARV"	0
+"441242"	2007	"PARCAE"	6
+"441242"	2008	"ALAARV"	0
+"441242"	2008	"PARCAE"	8
+"441242"	2009	"ALAARV"	0
+"441242"	2009	"PARCAE"	7
+"441242"	2010	"ALAARV"	0
+"441242"	2010	"PARCAE"	3
+"441242"	2011	"ALAARV"	0
+"441242"	2011	"PARCAE"	6
+"441242"	2012	"ALAARV"	0
+"441242"	2012	"PARCAE"	9
+"441242"	2013	"ALAARV"	0
+"441242"	2013	"PARCAE"	9
+"441242"	2014	"ALAARV"	0
+"441242"	2014	"PARCAE"	10
+"441242"	2015	"ALAARV"	0
+"441242"	2015	"PARCAE"	9
+"441242"	2016	"ALAARV"	0
+"441242"	2016	"PARCAE"	5
+"441242"	2017	"ALAARV"	0
+"441242"	2017	"PARCAE"	5
+"441242"	2018	"ALAARV"	0
+"441242"	2018	"PARCAE"	4
+"441259"	2018	"ALAARV"	2
+"441259"	2018	"PARCAE"	14
+"441265"	2004	"ALAARV"	2
+"441265"	2004	"PARCAE"	6
+"441265"	2005	"ALAARV"	2
+"441265"	2005	"PARCAE"	3
+"441265"	2006	"ALAARV"	2
+"441265"	2006	"PARCAE"	0
+"441265"	2007	"ALAARV"	0
+"441265"	2007	"PARCAE"	4
+"441265"	2008	"ALAARV"	1
+"441265"	2008	"PARCAE"	7
+"441265"	2009	"ALAARV"	1
+"441265"	2009	"PARCAE"	4
+"441265"	2010	"ALAARV"	1
+"441265"	2010	"PARCAE"	2
+"441265"	2011	"ALAARV"	2
+"441265"	2011	"PARCAE"	13
+"441265"	2012	"ALAARV"	0
+"441265"	2012	"PARCAE"	5
+"441265"	2013	"ALAARV"	1
+"441265"	2013	"PARCAE"	4
+"441307"	2016	"ALAARV"	2
+"441307"	2016	"PARCAE"	10
+"441307"	2017	"ALAARV"	2
+"441307"	2017	"PARCAE"	3
+"441307"	2018	"ALAARV"	1
+"441307"	2018	"PARCAE"	6
+"441311"	2015	"ALAARV"	0
+"441311"	2015	"PARCAE"	12
+"441311"	2016	"ALAARV"	0
+"441311"	2016	"PARCAE"	6
+"441311"	2017	"ALAARV"	0
+"441311"	2017	"PARCAE"	6
+"441311"	2018	"ALAARV"	0
+"441311"	2018	"PARCAE"	15
+"441340"	2004	"ALAARV"	0
+"441340"	2004	"PARCAE"	10
+"441340"	2005	"ALAARV"	0
+"441340"	2005	"PARCAE"	10
+"441340"	2006	"ALAARV"	0
+"441340"	2006	"PARCAE"	8
+"441340"	2007	"ALAARV"	0
+"441340"	2007	"PARCAE"	7
+"441340"	2008	"ALAARV"	0
+"441340"	2008	"PARCAE"	6
+"441340"	2009	"ALAARV"	0
+"441340"	2009	"PARCAE"	7
+"441340"	2010	"ALAARV"	0
+"441340"	2010	"PARCAE"	2
+"441340"	2011	"ALAARV"	0
+"441340"	2011	"PARCAE"	6
+"441340"	2012	"ALAARV"	0
+"441340"	2012	"PARCAE"	6
+"441340"	2013	"ALAARV"	0
+"441340"	2013	"PARCAE"	7
+"441340"	2014	"ALAARV"	0
+"441340"	2014	"PARCAE"	6
+"441340"	2015	"ALAARV"	0
+"441340"	2015	"PARCAE"	5
+"441376"	2014	"ALAARV"	0
+"441376"	2014	"PARCAE"	15
+"441376"	2015	"ALAARV"	0
+"441376"	2015	"PARCAE"	10
+"441376"	2016	"ALAARV"	0
+"441376"	2016	"PARCAE"	7
+"441376"	2017	"ALAARV"	0
+"441376"	2017	"PARCAE"	13
+"441376"	2018	"ALAARV"	0
+"441376"	2018	"PARCAE"	18
+"441558"	2001	"ALAARV"	2
+"441558"	2001	"PARCAE"	6
+"441558"	2002	"ALAARV"	1
+"441558"	2002	"PARCAE"	0
+"441558"	2003	"ALAARV"	1
+"441558"	2003	"PARCAE"	0
+"441558"	2004	"ALAARV"	2
+"441558"	2004	"PARCAE"	3
+"441558"	2005	"ALAARV"	1
+"441558"	2005	"PARCAE"	1
+"441558"	2006	"ALAARV"	1
+"441558"	2006	"PARCAE"	3
+"441558"	2007	"ALAARV"	2
+"441558"	2007	"PARCAE"	4
+"441558"	2008	"ALAARV"	1
+"441558"	2008	"PARCAE"	4
+"441558"	2009	"ALAARV"	1
+"441558"	2009	"PARCAE"	5
+"441558"	2011	"ALAARV"	1
+"441558"	2011	"PARCAE"	0
+"441558"	2012	"ALAARV"	0
+"441558"	2012	"PARCAE"	1
+"441594"	2004	"ALAARV"	12
+"441594"	2004	"PARCAE"	3
+"441594"	2005	"ALAARV"	9
+"441594"	2005	"PARCAE"	3
+"441594"	2006	"ALAARV"	10
+"441594"	2006	"PARCAE"	1
+"441594"	2007	"ALAARV"	5
+"441594"	2007	"PARCAE"	3
+"441594"	2008	"ALAARV"	6
+"441594"	2008	"PARCAE"	6
+"441594"	2009	"ALAARV"	1
+"441594"	2009	"PARCAE"	5
+"441640"	2012	"ALAARV"	12
+"441640"	2012	"PARCAE"	4
+"441680"	2012	"ALAARV"	2
+"441680"	2012	"PARCAE"	4
+"441680"	2013	"ALAARV"	1
+"441680"	2013	"PARCAE"	7
+"441680"	2014	"ALAARV"	0
+"441680"	2014	"PARCAE"	7
+"441680"	2015	"ALAARV"	1
+"441680"	2015	"PARCAE"	5
+"441680"	2016	"ALAARV"	0
+"441680"	2016	"PARCAE"	2
+"441680"	2017	"ALAARV"	0
+"441680"	2017	"PARCAE"	5
+"441680"	2018	"ALAARV"	0
+"441680"	2018	"PARCAE"	7
+"Ile de"	2018	"ALAARV"	3
+"Ile de"	2018	"PARCAE"	7
+"Le Mas"	2018	"ALAARV"	0
+"Le Mas"	2018	"PARCAE"	7
\ No newline at end of file
diff -r 000000000000 -r fb7b2cbd80bb test-data/levene.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/levene.txt	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,8 @@
+
+write table with levene test. 
+--> "Levene's Test for Homogeneity of Variance (center = median)"
+       Df F value    Pr(>F)    "
+group   1   22.02 3.145e-06 ***"
+      848                      "
+---"
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1"
diff -r 000000000000 -r fb7b2cbd80bb test-data/species.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/species.txt	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,6 @@
+Blenniidae
+Gobiidae
+Scorpaenidae
+Tripterygiidae
+Plesiopidae
+Serranidae
diff -r 000000000000 -r fb7b2cbd80bb test-data/test_bbs2.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_bbs2.txt	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,8 @@
+
+write table with levene test. 
+--> "Levene's Test for Homogeneity of Variance (center = median)"
+       Df F value    Pr(>F)    "
+group   1   22.02 3.145e-06 ***"
+      848                      "
+---"
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1"
diff -r 000000000000 -r fb7b2cbd80bb test-data/test_fish2.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_fish2.tabular	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,2 @@
+"x"
+"1" 6
diff -r 000000000000 -r fb7b2cbd80bb test-data/test_value_fish2.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_value_fish2.txt	Fri Aug 13 18:17:38 2021 +0000
@@ -0,0 +1,10 @@
+
+write table with eigenvalue. 
+--> "        eigenvalue variance.percent cumulative.variance.percent"
+Dim.1 2.849961e+00     5.699922e+01                    56.99922"
+Dim.2 1.229238e+00     2.458475e+01                    81.58397"
+Dim.3 7.482796e-01     1.496559e+01                    96.54956"
+Dim.4 1.725220e-01     3.450440e+00                   100.00000"
+Dim.5 1.948918e-14     3.897836e-13                   100.00000"
+Dim.6 9.545002e-34     1.909000e-32                   100.00000"
+Dim.7 2.137718e-35     4.275436e-34                   100.00000"