Mercurial > repos > ecology > ecology_stat_presence_abs
annotate macro.xml @ 1:9a2e0195bb43 draft default tip
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 60627aba07951226c8fd6bb3115be4bd118edd4e"
author | ecology |
---|---|
date | Fri, 13 Aug 2021 18:18:21 +0000 |
parents | e5552099d0e3 |
children |
rev | line source |
---|---|
0
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
1 <macros> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
2 <token name="@VERSION@">0.0.0</token> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
3 <xml name="Explo_requirements"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
4 <requirements> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
5 <requirement type="package" version="3.3.3">r-ggplot2</requirement> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
6 <yield /> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
7 </requirements> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
8 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
9 <xml name="explo_input"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
10 <param name="input" type="data" format="tabular" label="Input table"/> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
11 <param name="colnames" type="boolean" label="First line is a header line" checked="true"/> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
12 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
13 <xml name="explo_filter_colli"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
14 <filter> method['type'] == 'collinearity'</filter> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
15 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
16 <xml name="explo_filter_pca"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
17 <filter> method['type'] == 'pca'</filter> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
18 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
19 <xml name="explo_filter_vif"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
20 <filter> method['type'] == 'vif'</filter> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
21 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
22 <xml name="explo_filter_interr"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
23 <filter> method['type'] == 'interr'</filter> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
24 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
25 <xml name="explo_filter_autocorr"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
26 <filter> method['type'] == 'autocorr'</filter> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
27 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
28 <xml name="explo_filter_abund"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
29 <filter> method['type'] == 'abund'</filter> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
30 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
31 <xml name="explo_filter_pres_abs"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
32 <filter> method['type'] == 'pres_abs'</filter> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
33 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
34 <xml name="explo_filter_rare"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
35 <filter> method['type'] == 'rare'</filter> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
36 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
37 <xml name="explo_bibref"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
38 <citations> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
39 <citation type="bibtex"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
40 @unpublished{ |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
41 title={ A protocol for data exploration to avoid common statistical problems }, |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
42 authors={Alain F. Zuur, Elena N. Ieno, Chris S. Elphick}, |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
43 url={https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/j.2041-210X.2009.00001.x} |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
44 } |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
45 </citation> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
46 </citations> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
47 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
48 <xml name="book_bibref"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
49 <citations> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
50 <citation type="bibtex"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
51 @unpublished{ |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
52 title={ Numerical Ecology with R }, |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
53 author={Daniel Borcard, François Gillet, Pierre Legendre}, |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
54 } |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
55 </citation> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
56 </citations> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
57 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
58 <xml name="topic"> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
59 <edam_topics> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
60 <edam_topic>topic_0610</edam_topic> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
61 <edam_topic>topic_3050</edam_topic> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
62 </edam_topics> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
63 </xml> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
64 </macros> |
e5552099d0e3
"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 2f883743403105d9cac6d267496d985100da3958"
ecology
parents:
diff
changeset
|
65 |