Mercurial > repos > ecology > ecology_stat_presence_abs

comparison functions.r @ 1:9a2e0195bb43 draft default tip

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"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 60627aba07951226c8fd6bb3115be4bd118edd4e"
author ecology
date Fri, 13 Aug 2021 18:18:21 +0000
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comparison
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0:e5552099d0e3 1:9a2e0195bb43
1 #Rscript
2
3 #########################################################################################
4 ####################### Exploration data tools function #################################
5 #########################################################################################
6 #### Based on Romain Lorrillière R script
7 #### Modified by Alan Amosse, Benjamin Yguel and Marie Jossé for integrating within Galaxy-E
8
9 ######################################### start of the function makeTableAnalyse
10 ##Species are placed in separated columns and addition of zero on plots where at least one selected species is present
11 make_table_analyse <- function(data, var, spe, var2, var3) {
12 tab <- reshape(data
13 , v.names = var
14 , idvar = c(var2, var3)
15 , timevar = spe
16 , direction = "wide")
17 tab[is.na(tab)] <- 0 ###### remplace les na par des 0 / replace NAs by 0
18
19 colnames(tab) <- sub(paste0(var, "."), "", colnames(tab))### remplace le premier pattern "abond." par le second "" / replace the column names "abond." by ""
20 return(tab)
21 }
22 ######################################### end of the function makeTableAnalyse