Mercurial > repos > ecology > gdal_gdaladdo
changeset 0:ea0416ac16d0 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
| author | ecology |
|---|---|
| date | Tue, 26 Feb 2019 11:51:19 -0500 |
| parents | |
| children | 4d9e2b1c73f4 |
| files | gdal_macros.xml gdaladdo.xml test-data/stere.tif test-data/stere.tif.ovr |
| diffstat | 4 files changed, 228 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gdal_macros.xml Tue Feb 26 11:51:19 2019 -0500 @@ -0,0 +1,164 @@ +<macros> + <token name="@VERSION@">2.4.0</token> + <xml name="gdal_requirements"> + <requirements> + <requirement type="package" version="2.1.0">gdal</requirement> + <requirement type="package" version="3.5.0">geos</requirement> + </requirements> + </xml> + + <xml name="gdal_advanced_params_select"> + <param name="advanced" type="select" label="Specify advanced parameters"> + <option value="simple" selected="true">No, use program defaults.</option> + <option value="advanced">Yes, see full parameter list.</option> + </param> + <when value="simple"> + </when> + </xml> + + <xml name="gdal_param_te"> + <conditional name="condi_te"> + <param name="te" type="select" label="Georeferenced extents of output file" help="-te xmin ymin xmax ymax"> + <option value="no_te" selected="true">Don't use the -te option</option> + <option value="te">Use the -te option</option> + </param> + <when value="no_te"> + </when> + <when value="te"> + <param name="xmin" type="float" label="xmin" value="0" min="0" help="In target SRS by default, or in the SRS specified with -te_srs"/> + <param name="ymin" type="float" label="ymin" value="0" min="0" help="In target SRS by default, or in the SRS specified with -te_srs"/> + <param name="xmax" type="float" label="xmax" value="0" min="0" help="In target SRS by default, or in the SRS specified with -te_srs"/> + <param name="ymax" type="float" label="ymax" value="0" min="0" help="In target SRS by default, or in the SRS specified with -te_srs"/> + </when> + </conditional> + </xml> + + <xml name="gdal_param_r"> + <conditional name="condi_resample"> + <param label="Use a resampling method" help="-r resampling algorithm" name="resample" type="select"> + <option value="no_resampling" selected="true">Don't use a resampling method</option> + <option value="resampling">Use a resampling method, option -r</option> + </param> + <when value="resampling"> + <param name="r" type="select" label="Reseampling algorithm" > + <option value="nearest" selected="true"/> + <option value="bilinear"/> + <option value="cubic"/> + <option value="cubicspline"/> + <option value="lanczos"/> + <option value="average"/> + <option value="mode"/> + <option value="max"/> + <option value="min"/> + <option value="med">Median resampling</option> + <option value="q1">First quartile resampling</option> + <option value="q2">Third quartile resampling</option> + </param> + </when> + <when value="no_resampling"> + </when> + </conditional> + </xml> + + <xml name="gdal_param_tr"> + <conditional name="condi_tr"> + <param name="tr" type="select" label="Set the ouput file resolution" help="-tr xres yres. Set output file resolution (in target georeferenced units)"> + <option value="no_tr" selected="true">Don't use the -tr option</option> + <option value="tr">Use the -tr option</option> + </param> + <when value="no_tr"> + </when> + <when value="tr"> + <param name="xres" type="float" label="xres" value="0" min="0"/> + <param name="yres" type="float" label="yres" value="0" min="0"/> + </when> + </conditional> + </xml> + + <xml name="gdal_param_b"> + <param name="b" type="text" label="Select an input band band for output" help="eg : -b band -b 1 -b 2 -b 3. Bands are numbered from 1. Multiple -b switches may be used to select a set of input bands to write to the output file, or to reorder bands." value=""/> + </xml> + + <xml name="gdal_param_tap"> + <param name="tap" label="Align the coordinates" help="-tap Target Aligned Pixel, align the coordinates of the extent of the output file to the values of the -tr, such that the aligned extent includes the minimum extent" type="boolean" truevalue="-tap" falsevalue="" checked="false" /> + </xml> + + <xml name="gdal_param_separate"> + <param name="separate" type="boolean" truevalue="-separate" falsevalue="" checked="false" label="Place each input file into a separate band" help="-separate. In that case, only the first band of each dataset will be placed into a new band. Contrary to the default mode, it is not required that all bands have the same datatype" /> + </xml> + + <xml name="gdal_param_a_srs"> + <param name="a_srs" type="text" label="Override the projection for the output file" help="-a_srs srs_def. The srs_def may be any of the usual GDAL/OGR forms, complete WKT, PROJ.4, EPSG:n or a file containing the WKT. No reprojection is done" value="" /> + </xml> + + <xml name="gdal_param_stats"> + <param name="stats" type="boolean" truevalue="-stats" falsevalue="" checked="false" label="Force (re)computation of statistics" help="-stats. Read and display image statistics. Force computation if no statistics are sto.red in an image."/> + </xml> + + <xml name="gdal_param_norat"> + <param name="norat" type="boolean" truevalue="-norat" falsevalue="" checked="false" help="-norat. Do not copy source RAT into destination dataset." label="Suppress printing of raster attribute table."/> + </xml> + + <xml name="gdal_param_of"> + <param name="of" type="select" label="Output format -of" value="Gtiff" help="Select the output format. The default is GeoTIFF (GTiff). A short list of raster formats is currently enable in GalaxyE : GTiff, netCDF and VRT."> + <option value="GTiff">GTiff</option> + <option value="netCDF">Network Common Data Format - netCDF</option> + <option value="VRT">GDAL Virtual - VRT</option> + </param> + </xml> + + <xml name="gdal_param_co"> + <param name="co" type="text" label="Pass a creation option to the output format driver" help="-co NAME=VALUE. eg : COMPRESS=JPEG" value="" /> + </xml> + + <xml name="gdal_param_ot"> + <param name="ot" type="select" label="Datatype of the output bands" help="-ot Datatype"> + <option value="byte">Byte</option> + <option value="int16">Int16</option> + <option value="uint16">UInt16</option> + <option value="uint32">UInt32</option> + <option value="int32">Int32</option> + <option value="float32">Float32</option> + <option value="float64">Float64</option> + <option value="cint16">CInt16</option> + <option value="cint32">CInt32</option> + <option value="cfloat32">CFloat32</option> + <option value="cfloat64">CFloat64</option> + <option value="" selected="true">Select a datatype for the output bands (default)</option> + </param> + </xml> + +<!-- need to upgrade gdal version to use + <xml name="gdal_param_oo"> + <param name="oo" type="text" label="-oo NAME=VALUE" value="" /> + </xml> +--> + + <xml name="gdal_input_raster_multiple"> + <param type="data" name="input" format="gtiff,tiff,netcdf,VRT,txt,xml" help="Formats currently supported are : GTiff, netCDF and VRT" label="Gdal supported input file" multiple="true"/> + </xml> + + <xml name="gdal_output_change_format"> + <data name="output" format="GTiff" label="${on_string}.${of}"> + <change_format> + <when input="of" value="GTiff" format="tiff"/> + <when input="of" value="netCDF" format="netcdf"/> + <when input="of" value="VRT" format="txt"/> + </change_format> + </data> + </xml> + + <xml name="gdal_citation"> + <citations> + <citation type="bibtex"> + @Manual{, + title = {{GDAL/OGR} Geospatial Data Abstraction software Library}, + author = {{GDAL/OGR contributors}}, + organization = {Open Source Geospatial Foundation}, + year = {2018}, + url = {http://gdal.org}, + } + </citation> + </citations> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gdaladdo.xml Tue Feb 26 11:51:19 2019 -0500 @@ -0,0 +1,64 @@ +<tool id="gdal_gdaladdo" name="GDAL addo" version="@VERSION@"> + <description>builds or rebuilds overview images</description> + <macros> + <import>gdal_macros.xml</import> + </macros> + <expand macro="gdal_requirements" /> + <command detect_errors="exit_code"><![CDATA[ + gdaladdo '$input1' + -q + -ro + #if str($levels).strip()=='' + -clean + #else + '$levels' + --config COMPRESS_OVERVIEW DEFLATE + && cp '$input1''.ovr' 'output_ovr' + #end if + ]]></command> + + <inputs> + <param type="data" name="input1" label="Gdal supported raster input file" format="gtiff,tiff" help="Chose a GeoTIFF file"/> + <param name="levels" type="text" label="levels" help="A list of integral overview levels to build. eg : 2 4 8 16" value=""/> + </inputs> + + <outputs> + <data format="tiff" name="output" from_work_dir="output_ovr" label="${input1.name}.ovr"/> + </outputs> + + <tests> + <test> + <param name="input1" value="stere.tif"/> + <param name="levels" value="2 4 8 16" /> + <output name="output" file="stere.tif.ovr"/> + </test> + </tests> + + <help><![CDATA[ +========================== +Gdaladdo +========================== +**What it does** + +The gdaladdo utility can be used to build or rebuild overview images for most supported file formats with one of several downsampling algorithms. + +| + +**How to use it** + +Select a raster file from history and chose levels to build. + +| + +**Advanced options and sources** + +To see complete details and help section please check the official gdal sources. + +http://www.gdal.org + +http://www.gdal.org/gdaladdo.html + +Raster Processing Tutorial : https://trac.osgeo.org/gdal/wiki/UserDocs/RasterProcTutorial + ]]></help> + <expand macro="gdal_citation"/> +</tool>