Mercurial > repos > ecology > gdal_ogr2ogr
changeset 2:22c54afd1cf3 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/gdal commit d2c064afb4680f459012473e4de8653079e32c15
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--- a/gdal_macros.xml Wed Feb 27 14:15:21 2019 -0500 +++ b/gdal_macros.xml Thu Jun 13 11:29:34 2019 -0400 @@ -1,5 +1,5 @@ <macros> - <token name="@VERSION@">2.4.0</token> + <token name="@VERSION@">3.0.0</token> <xml name="gdal_requirements"> <requirements> <requirement type="package" version="@VERSION@">gdal</requirement>
--- a/ogr2ogr.xml Wed Feb 27 14:15:21 2019 -0500 +++ b/ogr2ogr.xml Thu Jun 13 11:29:34 2019 -0400 @@ -2,25 +2,31 @@ <description>converts simple features data between file formats</description> <macros> <import>gdal_macros.xml</import> - </macros> - <requirements> - <requirement type="package" version="2.4.0">gdal</requirement> - <requirement type="package" version="3.7.1">geos</requirement> - </requirements> + </macros> + <expand macro="gdal_requirements" /> <command detect_errors="exit_code"><![CDATA[ - ogr2ogr -f '$f' + ogr2ogr + -f '$f' #if $f=='ESRI Shapefile' - 'output.shp' + 'shapefile.shp' #else - '$output' + 'output' #end if - '$input' + #if $input.is_of_type("shp") + ${os.path.join( $input.extra_files_path, 'shapefile.shp' )} + #else + '$input' + #end if + #if $f=='ESRI Shapefile' + && + mkdir ${shapefile.extra_files_path} && + mv shapefile.* ${shapefile.extra_files_path} + #end if ]]></command> <inputs> - <param type="data" name="input" format="data" label="Gdal supported input file" help="http://www.gdal.org/ogr_formats.html"/> - <param type="select" name="f" label="Conversion format" value="" - help="Select the format to convert your input file. Currently supported : Shapefile, GeoJSON, GML, KML and WFS. The shapefiles outputs shp, shx, dbf and prj will populate a datacollection."> - <option value="ESRI Shapefile">ESRI Shapefile</option> + <param type="data" name="input" format="shp,xml,json,txt" label="Gdal supported input file" help="http://www.gdal.org/ogr_formats.html"/> + <param type="select" name="f" label="Conversion format" value="" help="Select the format to convert your input file. Currently supported : Shapefile, GeoJSON, GML, KML and WFS."> + <option value="ESRI Shapefile">ESRI Shapefile</option> <option value="GeoJSON">GEOJSON</option> <option value="GML">GML</option> <option value="KML">KML</option> @@ -28,37 +34,74 @@ </param> </inputs> <outputs> - <data name="output" format="xml" label="${on_string}.${f}"> + <data name="output" from_work_dir="output" format="xml" label="${on_string}.${f}"> <filter>f != 'ESRI Shapefile'</filter> <change_format> - <when input="f" value="GeoJson" format="json"/> + <when input="f" value="GeoJSON" format="json"/> <when input="f" value="GML" format="xml"/> <when input="f" value="KML" format="xml"/> <when input="f" value="WFS" format="txt"/> </change_format> </data> - <collection name="shapefile" type="list" label="${on_string}.shapefile"> + <data name="shapefile" format="shp" from_work_dir="shapefile" label="${on_string}.shapefile"> <filter>f == 'ESRI Shapefile'</filter> - <data name="shp" format="binary" from_work_dir="*.shp"/> - <data name="shx" format="binary" from_work_dir="*.shx"/> - <data name="dbf" format="binary" from_work_dir="*.dbf"/> - <data name="prj" format="txt" from_work_dir="*.prj"/> - </collection> + </data> </outputs> - <tests> - <test> <!-- ogr2ogr -f KML custom.geo.kml custom.geo.json --> - <param name="input" value="custom.geo.json"/> + <test> + <param name="input" value="shp_compositefiles/shapefile.xml" ftype="shp"> + <composite_data value="shp_compositefiles/shapefile.shp"/> + <composite_data value="shp_compositefiles/shapefile.shx"/> + <composite_data value="shp_compositefiles/shapefile.dbf"/> + <composite_data value="shp_compositefiles/shapefile.sbn"/> + <composite_data value="shp_compositefiles/shapefile.sbx"/> + </param> <param name="f" value="KML"/> - <output name="output"> - <assert_contents> - <has_text text="20.5902474301049,41.8554041611336 20.4631750830992,41.5150890162753 20.6051819190374,41.0862263046852 21.0200403174764,40.8427269557259 20.9999898617472,40.580003973954 20.6749967790636,40.434999904943 20.6150004411728,40.1100068222594 20.1500159034105,39.624997666984 19.9800004411701,39.6949933945234 19.9600016618732,39.915005805006 19.4060819841367,40.2507734238225 19.3190588721571,40.7272301295536 19.4035498389543,41.4095657415355 19.5400272966371,41.7199860703128 19.371768833095,41.8775475123707 19.3044861182508,42.1957451442078 19.7380513851796,42.6882473821656 19.8016133968987,42.5000934921908 20.0707,42.58863 20.2837545101819,42.3202595078151 20.52295,42.21787 20.5902474301049,41.8554041611336"/> - 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</assert_contents> + <output file="ogr2ogr_KML.kml" name="output"/> + </test> + <test> + <param name="input" value="shp_compositefiles/shapefile.xml" ftype="shp"> + <composite_data value="shp_compositefiles/shapefile.shp"/> + <composite_data value="shp_compositefiles/shapefile.shx"/> + <composite_data value="shp_compositefiles/shapefile.dbf"/> + <composite_data value="shp_compositefiles/shapefile.sbn"/> + <composite_data value="shp_compositefiles/shapefile.sbx"/> + </param> + <param name="f" value="GML"/> + <output file="ogr2ogr_GML.gml" name="output"/> + </test> + <test> + <param name="input" value="shp_compositefiles/shapefile.xml" ftype="shp"> + <composite_data value="shp_compositefiles/shapefile.shp"/> + <composite_data value="shp_compositefiles/shapefile.shx"/> + <composite_data value="shp_compositefiles/shapefile.dbf"/> + <composite_data value="shp_compositefiles/shapefile.sbn"/> + <composite_data value="shp_compositefiles/shapefile.sbx"/> + </param> + <param name="f" value="GeoJSON"/> + <output file="ogr2ogr_geojson.json" name="output"/> + </test> + <test> + <param name="input" value="ogr2ogr_KML.kml" ftype="xml"/> + <param name="f" value="GeoJSON"/> + <output file="ogr2ogr_test2_geojson.json" name="output"/> + </test> + <test> + <param name="input" value="ogr2ogr_KML.kml" ftype="xml"/> + <param name="f" value="ESRI Shapefile"/> + <output file="shp_compositefiles/ogr2ogr_shapefile2.html" name="shapefile"> + <extra_files type="file" name="shapefile.dbf" value="shp_compositefiles/ogr2ogr_shapefile2.dbf" compare="sim_size" delta="50"/> + <extra_files type="file" name="shapefile.prj" value="shp_compositefiles/ogr2ogr_shapefile2.prj"/> + <extra_files type="file" name="shapefile.shp" value="shp_compositefiles/ogr2ogr_shapefile2.shp"/> + <extra_files type="file" name="shapefile.shx" value="shp_compositefiles/ogr2ogr_shapefile2.shx"/> </output> </test> + <test> + <param name="input" value="ogr2ogr_KML.kml" ftype="xml"/> + <param name="f" value="GML"/> + <output file="ogr2ogr_GML2.gml" name="output"/> + </test> </tests> - <help><![CDATA[ ======== Ogrinfo @@ -82,7 +125,7 @@ http://www.gdal.org -http://www.gdal.org/ogr_utilities.html +https://gdal.org/programs/ogr2ogr.html http://download.osgeo.org/gdal/workshop/foss4ge2015/workshop_gdal.pdf ]]></help>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/ogr2ogr_GML.gml Thu Jun 13 11:29:34 2019 -0400 @@ -0,0 +1,224 @@ +<?xml version="1.0" encoding="utf-8" ?> +<ogr:FeatureCollection + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" + xsi:schemaLocation="http://ogr.maptools.org/ output.xsd" + xmlns:ogr="http://ogr.maptools.org/" + xmlns:gml="http://www.opengis.net/gml"> + <gml:boundedBy> + <gml:Box> + <gml:coord><gml:X>-115.0414962768555</gml:X><gml:Y>15.4399242401123</gml:Y></gml:coord> + <gml:coord><gml:X>-90.65814208984375</gml:X><gml:Y>32.72083282470703</gml:Y></gml:coord> + </gml:Box> + </gml:boundedBy> + + <gml:featureMember> + <ogr:shapefile fid="shapefile.0"> + <ogr:geometryProperty><gml:LineString><gml:coordinates>-98.7458343505859,21.275203704834 -98.7814025878906,21.1805534362793 -98.9561157226562,21.0749969482422 -98.9625091552734,21.0119438171387 -99.0036163330078,21.0180549621582 -99.0561218261719,20.9449996948242 -99.0222320556641,20.8469429016113 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/shp_compositefiles/ogr2ogr_shapefile2.html Thu Jun 13 11:29:34 2019 -0400 @@ -0,0 +1,17 @@ +<html><head><title>Shapefile Galaxy Composite Dataset</title></head><p/> +<div>This composite dataset is composed of the following files:<p/><ul> +<li><a href="shapefile.shp" type="application/binary">shapefile.shp (Geometry File (shp))</a></li> +<li><a href="shapefile.shx" type="application/binary">shapefile.shx (Geometry index File (shx))</a></li> +<li><a href="shapefile.dbf" type="application/binary">shapefile.dbf (Columnar attributes for each shape (dbf))</a></li> +<li><a href="shapefile.prj" type="application/binary">shapefile.prj (Projection description (prj))</a> (optional)</li> +<li><a href="shapefile.sbn" type="application/binary">shapefile.sbn (Spatial index of the features (sbn))</a> (optional)</li> +<li><a href="shapefile.sbx" type="application/binary">shapefile.sbx (Spatial index of the features (sbx))</a> (optional)</li> +<li><a href="shapefile.fbn" type="application/binary">shapefile.fbn (Read only spatial index of the features (fbn))</a> (optional)</li> +<li><a href="shapefile.fbx" type="application/binary">shapefile.fbx (Read only spatial index of the features (fbx))</a> (optional)</li> +<li><a href="shapefile.ain" type="application/binary">shapefile.ain (Attribute index of the active fields in a table (ain))</a> (optional)</li> +<li><a href="shapefile.aih" type="application/binary">shapefile.aih (Attribute index of the active fields in a table (aih))</a> (optional)</li> +<li><a href="shapefile.atx" type="application/binary">shapefile.atx (Attribute index for the dbf file (atx))</a> (optional)</li> +<li><a href="shapefile.ixs" type="application/binary">shapefile.ixs (Geocoding index (ixs))</a> (optional)</li> +<li><a href="shapefile.mxs" type="application/binary">shapefile.mxs (Geocoding index in ODB format (mxs))</a> (optional)</li> +<li><a href="shapefile.shp.xml" type="application/binary">shapefile.shp.xml (Geospatial metadata in XML format (xml))</a> (optional)</li> +</ul></div></html>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/shp_compositefiles/ogr2ogr_shapefile2.prj Thu Jun 13 11:29:34 2019 -0400 @@ -0,0 +1,1 @@ +GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]] \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/shp_compositefiles/shapefile.html Thu Jun 13 11:29:34 2019 -0400 @@ -0,0 +1,17 @@ +<html><head><title>Shapefile Galaxy Composite Dataset</title></head><p/> +<div>This composite dataset is composed of the following files:<p/><ul> +<li><a href="shapefile.shp" type="application/binary">shapefile.shp (Geometry File (shp))</a></li> +<li><a href="shapefile.shx" type="application/binary">shapefile.shx (Geometry index File (shx))</a></li> +<li><a href="shapefile.dbf" type="application/binary">shapefile.dbf (Columnar attributes for each shape (dbf))</a></li> +<li><a href="shapefile.prj" type="application/binary">shapefile.prj (Projection description (prj))</a> (optional)</li> +<li><a href="shapefile.sbn" type="application/binary">shapefile.sbn (Spatial index of the features (sbn))</a> (optional)</li> +<li><a href="shapefile.sbx" type="application/binary">shapefile.sbx (Spatial index of the features (sbx))</a> (optional)</li> +<li><a href="shapefile.fbn" type="application/binary">shapefile.fbn (Read only spatial index of the features (fbn))</a> (optional)</li> +<li><a href="shapefile.fbx" type="application/binary">shapefile.fbx (Read only spatial index of the features (fbx))</a> (optional)</li> +<li><a href="shapefile.ain" type="application/binary">shapefile.ain (Attribute index of the active fields in a table (ain))</a> (optional)</li> +<li><a href="shapefile.aih" type="application/binary">shapefile.aih (Attribute index of the active fields in a table (aih))</a> (optional)</li> +<li><a href="shapefile.atx" type="application/binary">shapefile.atx (Attribute index for the dbf file (atx))</a> (optional)</li> +<li><a href="shapefile.ixs" type="application/binary">shapefile.ixs (Geocoding index (ixs))</a> (optional)</li> +<li><a href="shapefile.mxs" type="application/binary">shapefile.mxs (Geocoding index in ODB format (mxs))</a> (optional)</li> +<li><a href="shapefile.shp.xml" type="application/binary">shapefile.shp.xml (Geospatial metadata in XML format (xml))</a> (optional)</li> +</ul></div></html>