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comparison table_templates.R @ 0:dc2dfad1627b draft

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
author ecology
date Sat, 02 Dec 2023 01:49:10 +0000
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-1:000000000000 0:dc2dfad1627b
1 #28/11/2023 #SEGUINEAU Pauline
2
3 #Load packages
4
5 library(EMLassemblyline)
6
7 #Load arguments
8
9 if (length(commandArgs(trailingOnly = TRUE)) > 0) {
10 data_table <- commandArgs(trailingOnly = TRUE)[1]
11 }
12
13 #Transform arguments
14
15 table = strsplit(data_table," ")
16
17 #Make templates to describe data tables : Describes columns of a data table (classes, units, datetime formats, missing value codes) + catégorical variables.
18
19 template_table_attributes(path = ".",data.path= "data_files", data.table = table[[1]])
20 template_categorical_variables(path = ".", data.path = "data_files")
21