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comparison Map_shp.xml @ 0:ce9979488ebb draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Geom_mean_workflow commit 3f11e193fd9ba5bf0c706cd5d65d6398166776cb
author ecology
date Sat, 25 Nov 2023 15:18:33 +0000
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-1:000000000000 0:ce9979488ebb
1 <tool id="Map_shp" name="Make a map with a shapefile" version="0.1.0+galaxy0">
2 <requirements>
3 <requirement type="package" version="4.3.2">r-base</requirement>
4 <requirement type="package" version="3.4.4">r-ggplot2</requirement>
5 <requirement type="package" version="1.0_14">r-sf</requirement>
6 <requirement type="package" version="1.1.9">r-ggspatial</requirement>
7 <requirement type="package" version="1.1.3">r-dplyr</requirement>
8 <requirement type="package" version="1.1_3">r-rcolorbrewer</requirement>
9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[
11 Rscript
12 "$__tool_directory__/Map_shp.R"
13 #if $input1.is_of_type("shp")
14 ${os.path.join( $input1.extra_files_path, "shapefile.shp" )}
15 #else
16 "$input1"
17 #end if
18 "$input2"
19 "$input3"
20 "$input4"
21 "$input5"
22 "$output"
23
24 ]]></command>
25 <inputs>
26 <param name="input1" type="data" format="shp" label="Shapefile"/>
27 <param name="input2" type="data" format="tabular" label="Data to represent"/>
28 <param name="input3" type="text" label="What is the title of your map ?">
29 <sanitizer invalid_char="">
30 <valid initial="string.printable">
31 <add value="é"/>
32 <add value="è"/>
33 </valid>
34 </sanitizer>
35 </param>
36 <param name="input4" type="text" label="What is the legend of your map ?">
37 <sanitizer invalid_char="">
38 <valid initial="string.printable">
39 <add value="é"/>
40 <add value="è"/>
41 </valid>
42 </sanitizer>
43 </param>
44 <param name="input5" type="boolean" label="Display the geographical coordinates ?"/>
45 </inputs>
46 <outputs>
47 <data name="output" from_work_dir="map.pdf" format="pdf" label="map.pdf"/>
48 </outputs>
49 <tests>
50 <test>
51 <param name="input1" value="GRECO/GRECO_l93.html" ftype="shp">
52 <composite_data value="GRECO/GRECO_l93.shp"/>
53 <composite_data value="GRECO/GRECO_l93.shx"/>
54 <composite_data value="GRECO/GRECO_l93.dbf"/>
55 <composite_data value="GRECO/GRECO_l93.prj"/>
56 </param>
57 <param name='input2' value="evolution_rate.tsv"/>
58 <param name='input3' value="Taux d'évolution du volume des bois favorables à la biodiversité par GRECO"/>
59 <param name='input4' value="Taux d'évolution (%) \nentre les périodes \n2008-2012 et 2013-2017"/>
60 <param name='input5' value="true"/>
61 <output name='output' value="map.pdf"/>
62 </test>
63 </tests>
64 <help><![CDATA[
65 ==================
66 **What it does ?**
67 ==================
68
69 This tool allows to build a map from a shapefile and color the areas according to a percentage (case study dead wood evolution rate).
70
71 ]]></help>
72 </tool>